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Convert U to T instead of U to N when sam_parsing. #1854

Merged
merged 1 commit into from
Oct 25, 2024
Merged

Convert U to T instead of U to N when sam_parsing. #1854

merged 1 commit into from
Oct 25, 2024

Commits on Oct 24, 2024

  1. Convert U to T instead of U to N when sam_parsing. 

    As this changes seq_nt16_table it changes it for all other uses of
this lookup table too, which will be widespread.  However this feels
like a reasonable thing to do given it only has an impact on data
which is currently out of bounds of what is expected.

Fixes samtools/samtools#2131
    @jkbonfield
    jkbonfield committed Oct 24, 2024
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