EFO: add disease precision classifications from nxontology-ml #20
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dhimmel
commented
Oct 10, 2023
| { version = "^2.0.1", markers = "sys_platform != 'linux'", source = "pypi" }, | ||
| # Use different src for linux, see: https://pytorch.org/get-started/locally/ | ||
| { version = "^2.0.1", markers = "sys_platform == 'linux'", source = "pytorch-cpu-src" }, | ||
| ] |
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Adding the nxontology-ml dependency as well as torch explicitly for the Repository "pytorch-cpu-src" does not exist issue increased installation time on GH actions from 45 seconds to 90 seconds.
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resolving nxontology-ml compatibility in related-sciences/nxontology-ml#43 |
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poetry add git+https://github.com/related-sciences/nxontology-ml@fd5993744f374053ae55a76308d12218e4ecf1ce poetry pyproject: allow minor version increments for greater compatability update nxontology-ml update poetry update poetry
classify_disease_precision
Got the following error:
ValueError: new record already exists and merge=False: {('icd10cm', 'https://icd.codes/icd10cm/', 'ICD10CM', 'http://bioregistry.io/ICD10CM:,http://bioregistry.io/icd10cm:,http://icd.codes/icd10cm/,http://purl.bioontology.org/ontology/ICD10CM/,https://bioregistry.io/ICD10CM:,https://bioregistry.io/icd10cm:,https://purl.bioontology.org/ontology/ICD10CM/'): ['URI prefix match']}
Presumably icd10cm has been added.
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A local run of |
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refs related-sciences/nxontology-ml#35