Merge pull request #60 from rcalinjageman/development

More tweaks for 1.0.4

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 1.0.2
-Date: 2024-03-16 21:06:18 UTC
-SHA: b7470d32214b7f38350f0265100845b15ce51ee4
+Version: 1.0.4
+Date: 2024-09-11 00:48:54 UTC
+SHA: 4484803ae42ad9d0ccff8db6a965aafe2893ea2a

DESCRIPTION

@@ -1,11 +1,12 @@
 Package: esci
+Type: Package
 Title: Estimation Statistics with Confidence Intervals
 Version: 1.0.4
 Authors@R: person("Robert", "Calin-Jageman", email = "[email protected]",
   role = c("aut", "cre", "cph"))
 Description: A collection of functions and 'jamovi' module for the estimation approach to inferential statistics, the approach which emphasizes effect sizes, interval estimates, and meta-analysis. Nearly all functions are based on 'statpsych' and 'metafor'.  This package is still under active development, and breaking changes are likely, especially with the plot and hypothesis test functions.  Data sets are included for all examples from Cumming & Calin-Jageman (2024) <ISBN:9780367531508>.
-URL: https://rcalinjageman.github.io/esci/, https://github.com/rcalinjageman/esci
-BugReports: https://github.com/rcalinjageman/esci/issues
+URL: https://github.com/rcalinjageman/esci/, https://rcalinjageman.github.io/esci/
+BugReports: https://github.com/rcalinjageman/esci/issues/
 License: GPL-3
 Encoding: UTF-8
 LazyData: true
@@ -35,4 +36,4 @@ Suggests:
     testthat (>= 3.0.0)
 Config/testthat/edition: 3
 Depends: 
-    R (>= 2.10)
+    R (>= 2.10)

R/data.R

@@ -20,7 +20,7 @@
 #'   \item{Kidney_Rate, per million population}{numeric - State where data was collected}
 #'   \item{WB Change 2013-2010}{numeric - State where data was collected}
 #' }
-#' @source <https://journals.sagepub.com/doi/full/10.1177/0956797613516148>
+#' @source \doi{10.1177/0956797613516148}
 "data_altruism_happiness"
 
 #' Anchor Estimate ma - Ch9 - Many Labs replications of Jacowitz and Kahneman (1995)
@@ -50,7 +50,7 @@
 #'   \item{USAorNot}{factor}
 #'   \item{Country}{factor}
 #' }
-#' @source <https://econtent.hogrefe.com/doi/10.1027/1864-9335/a000178>
+#' @source \doi{10.1027/1864-9335/a000178}
 "data_anchor_estimate_ma"
 
 #' Basol badnews - Ch07 - from Basol et al. (2020)
@@ -85,7 +85,7 @@
 #'   \item{Diff confidence}{numeric}
 #'   \item{Condition}{factor}
 #' }
-#' @source <https://journalofcognition.org/articles/10.5334/joc.91>
+#' @source \doi{10.5334/joc.91}
 "data_basol_badnews"
 
 #' Bem Psychic - Ch13 - from Bem and Honorton (1994)
@@ -120,7 +120,7 @@
 #'   \item{N(Hits)}{integer}
 #'   \item{Proportion Hits}{numeric}
 #' }
-#' @source <https://psycnet.apa.org/record/1994-20286-001>
+#' @source \doi{10.1037/0033-2909.115.1.25}
 "data_bem_psychic"
 
 #' BodyWellF - Ch12 - Body Satisfaction and Well-being data for females from Figure 11.24 right panel
@@ -225,7 +225,7 @@
 #'   \item{Johnson Condition}{factor}
 #'   \item{Johnson Moral judgment}{numeric}
 #' }
-#' @source <https://econtent.hogrefe.com/doi/full/10.1027/1864-9335/a000186>
+#' @source \doi{10.1027/1864-9335/a000186}
 "data_clean_moral"
 
 #' College survey 1 - Ch03 - for End-of-Chapter Exercise 3.3
@@ -329,7 +329,7 @@
 #'   \item{AccurOld}{numeric}
 #'   \item{AccurNew}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/full/10.1177/0956797619887896>
+#' @source \doi{10.1177/0956797619887896}
 "data_effronraj_fakenews"
 
 #' Emotion heartrate - Ch8 - from Lakens (2013)
@@ -348,7 +348,7 @@
 #'   \item{HR_baseline}{numeric}
 #'   \item{HR_anger}{numeric}
 #' }
-#' @source <https://ieeexplore.ieee.org/abstract/document/6464255>
+#' @source \doi{10.1109/T-AFFC.2013.3}
 "data_emotion_heartrate"
 
 #' Exam Scores - Ch11 - for End-of-Chapter Exercise 11.2
@@ -393,7 +393,7 @@
 #'   \item{s Noflag}{numeric}
 #'   \item{n Noflag}{integer}
 #' }
-#' @source <https://openpsychologydata.metajnl.com/articles/10.5334/jopd.ad>
+#' @source \doi{10.5334/jopd.ad}
 "data_flag_priming_ma"
 
 #' Gender math IAT ma - Ch9 - Many Labs replications of Nosek et al. (2002)
@@ -422,7 +422,7 @@
 #'   \item{USAorNot}{factor}
 #'   \item{Country}{factor}
 #' }
-#' @source <https://psycnet.apa.org/fulltext/2014-20922-002.html>
+#' @source \doi{10.1027/1864-9335/a000178}
 "data_gender_math_iat_ma"
 
 #' Gender math IAT - Ch07 - Ithaca and SDSU replications of Nosek et al. (2002)
@@ -448,7 +448,7 @@
 #'   \item{SDSU gender}{factor}
 #'   \item{SDSU IAT}{numeric}
 #' }
-#' @source <https://psycnet.apa.org/fulltext/2014-20922-002.html>
+#' @source \doi{10.1027/1864-9335/a000178}
 "data_gender_math_iat"
 
 #' Halagappa - Ch14 - from Halagappa et al. (2007)
@@ -477,7 +477,7 @@
 #'   \item{SD}{numeric}
 #'   \item{n}{integer}
 #' }
-#' @source <https://www.sciencedirect.com/science/article/abs/pii/S0969996106003251>
+#' @source \doi{10.1016/j.nbd.2006.12.019}
 "data_halagappa"
 
 #' Home Prices - Ch12 - for End-of-Chapter Exercise 12.2
@@ -531,7 +531,7 @@
 #'   \item{Prediction}{numeric}
 #'   \item{Performance}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/abs/10.1177/0956797617740646>
+#' @source \doi{10.1177/0956797617740646}
 "data_kardas_expt_3"
 
 #' Kardas Expt 4 - Ch07 - from Kardas and O'Brien (2018), Experiment 4
@@ -565,7 +565,7 @@
 #'   \item{Performance}{integer}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/abs/10.1177/0956797617740646>
+#' @source \doi{10.1177/0956797617740646}
 "data_kardas_expt_4"
 
 #' Labels flavor - Ch8 - from Floretta-Schiller et al. (2015)
@@ -623,6 +623,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_3groups"
 
 #' Latimier Prequiz - Ch03 - Prequiz group in Latimier et al. (2019)
@@ -638,7 +639,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{TIme}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_prequiz"
 
 #' Latimier Quiz Prequiz - Ch07 - Quiz and Prequiz groups in Latimier et al. (2019)
@@ -654,7 +655,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_quiz_prequiz"
 
 #' Latimier Quiz - Ch03 - Quiz group in Latimier et al. (2019)
@@ -670,7 +671,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_quiz"
 
 #' Latimier Reread Prequiz - Ch07 - Reread and Prequiz groups in Latimier et al. (2019)
@@ -686,7 +687,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_reread_prequiz"
 
 #' Latimier Reread Quiz - Ch07 - Reread and Quiz groups in Latimier et al. (2019)
@@ -702,7 +703,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_reread_quiz"
 
 #' Latimier Reread - Ch03 - Reread group in Latimier et al. (2019)
@@ -718,7 +719,7 @@
 #'   \item{Test%}{numeric}
 #'   \item{Time}{numeric}
 #' }
-#' @source <https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/XPYPMF>
+#' @source \doi{10.7910/DVN/XPYPMF}
 "data_latimier_reread"
 
 #' Macnamara r ma - Ch11 - from Macnamara et al. (2014)
@@ -748,7 +749,7 @@
 #'   \item{N}{integer}
 #'   \item{Instrument_Type}{factor}
 #' }
-#' @source <https://journals.sagepub.com/doi/full/10.1177/0956797614535810>
+#' @source \doi{10.1177/0956797614535810}
 "data_macnamara_r_ma"
 
 #' McCabeMichael brain - Ch9 - from Michael et al. (2013)
@@ -800,7 +801,7 @@
 #'   \item{SimpleCritique}{factor}
 #'   \item{Research group}{factor}
 #' }
-#' @source <https://link.springer.com/article/10.3758/s13423-013-0391-6>
+#' @source \doi{10.3758/s13423-013-0391-6}
 "data_mccabemichael_brain"
 
 #' McCabeMichael brain2 - Ch9 - from Michael et al. (2013)
@@ -821,7 +822,7 @@
 #'   \item{SimpleCritique}{factor}
 #'   \item{Research group}{factor}
 #' }
-#' @source <https://link.springer.com/article/10.3758/s13423-013-0391-6>
+#' @source \doi{10.3758/s13423-013-0391-6}
 "data_mccabemichael_brain2"
 
 #' MeditationBrain - Ch15 - from Holzel et al. (2011)
@@ -854,7 +855,7 @@
 #'   \item{MeditationPre}{numeric}
 #'   \item{MeditationPost}{numeric}
 #' }
-#' @source <https://link.springer.com/chapter/10.1007/978-94-007-2079-4_9>
+#' @source \doi{10.1007/978-94-007-2079-4_9}
 "data_meditationbrain"
 
 #' OrganicMoral - Ch14 - from Eskine (2013)
@@ -888,7 +889,7 @@
 #'   \item{ReplicationGroup}{factor}
 #'   \item{MoralJudgmentment}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/full/10.1177/1948550616639649>
+#' @source \doi{10.1177/1948550616639649}
 "data_organicmoral"
 
 #'
@@ -901,7 +902,7 @@
 #'   \item{condition}{factor}
 #'   \item{transcription}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/full/10.1177/0956797614524581>
+#' @source \doi{10.1177/0956797614524581}
 "data_penlaptop1"
 
 #' PowerPerformance ma - Ch9 - from Burgmer and Englich (2012), and Cusack et al. (2015)
@@ -935,7 +936,7 @@
 #'   \item{n Control}{integer}
 #'   \item{n Power}{integer}
 #' }
-#' @source <https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140806>
+#' @source \doi{10.1371/journal.pone.0140806}
 "data_powerperformance_ma"
 
 #' RattanMotivation - Ch14 - from Rattan et al. (2012)
@@ -963,18 +964,20 @@
 #'   \item{Group}{factor}
 #'   \item{Motivation}{numeric}
 #' }
-#' @source <https://www.sciencedirect.com/science/article/pii/S0022103111003027>
+#' @source \doi{10.1016/j.jesp.2011.12.012}
 "data_rattanmotivation"
 
-#' ReligionSharing - Ch14 - for End-of-Chapter Exercise 14.3
+#' ReligionSharing - Ch14 - **RETRACTED DATA** used in End-of-Chapter Exercise 14.3
 #'
 #' To what extent is a religious upbringing related to prosocial behavior in
 #' childhood? To investigate, a large international sample of children was asked
 #' to play a game in which they were given 10 stickers but then asked if they
 #' would give some of these stickers away to another child who had not been able
 #' to be tested that day. The number of stickers donated was considered a
 #' measure of altruistic sharing. In addition, the parents of each child
-#' reported the family's religion. Summary data provided.
+#' reported the family's religion. Summary data provided.  **THIS STUDY
+#' HAS BEEN RETRACTED DUE TO AN ERRONEOUS ANALYSIS - THE DATASET WILL BE
+#' REMOVED FROM FUTURE VERSIONS OF ESCI AND THE BOOK**
 #'
 #' @format ## `data_religionsharing`
 #' A data frame with 3 rows and 4 columns:
@@ -984,6 +987,7 @@
 #'   \item{SD}{numeric}
 #'   \item{N}{integer}
 #' }
+#' @source \doi{10.1016/j.cub.2015.09.056}
 "data_religionsharing"
 
 #' Religious belief - Ch03 - for End-of-Chapter Exercise 3.5
@@ -1025,7 +1029,7 @@
 #'   \item{Pretest}{numeric}
 #'   \item{Posttest}{numeric}
 #' }
-#' @source <https://bpspsychub.onlinelibrary.wiley.com/doi/abs/10.1111/j.2044-8279.2012.02083.x>
+#' @source \doi{10.1111/j.2044-8279.2012.02083.x}
 "data_selfexplain"
 
 #' SimmonsCredibility - Ch14 - from Simmons and Nelson (2020)
@@ -1158,7 +1162,7 @@
 #'   \item{EaseUseSD}{numeric}
 #'   \item{EaseUseN}{integer}
 #' }
-#' @source <https://www.sciencedirect.com/science/article/abs/pii/S0361476X97909772>
+#' @source \doi{10.1006/ceps.1997.0977}
 "data_studystrategies"
 
 #' Thomason 1 - Ch11 - from Thomason 1
@@ -1201,7 +1205,7 @@
 #'   \item{Difficulty}{factor}
 #'   \item{Agression}{numeric}
 #' }
-#' @source <https://journals.sagepub.com/doi/10.1177/0956797619829688>
+#' @source \doi{10.1177/0956797619829688}
 "data_videogameaggression"