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Awskube #91

Merged
merged 172 commits into from
Mar 15, 2024
Merged

Awskube #91

merged 172 commits into from
Mar 15, 2024

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landmanbester
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landmanbester added 30 commits July 18, 2022 13:24
Bizarre segfault when running clark clean test but not if running fro…
ecccb6c 
…m terminal
only mop when clean stalls. rstrip / from gain_table and ms inputs in…
ad3ea87 
… init and degrid workers
Do not write fits files during tests
118416a
awskube
b3bd2b5
Add option to overwrite xds in init
6463a21
change dtype of ms to str in degrid config
028d623
update defaults in degrid worker
abc3a5f
Remove debug statement in degrid
70a2d28
rechunk model_vis before writing when model_column does not exist
316903a
set model_exists to True when it already exists
68b8538
rechunk model_vis to on disk chunks regardless
1b779c1
populate on_disc_chunks regardless
70831ae
Update Dockerfile
f5d0aed
fix dockerfile
5a8672d
Let daskms take care of rechunking new columns
c148190
replace . with _ in stimela_cabs
81b14d4
remove from_url_and_kw, depend on dask-ms master
1eb16f3
update dockerfile, actually grid weights when computing image space w…
916c2e6 
…eighting
Parallel over wavelet basis using numba.prange
88d96a7
Fix failing tests, make wavelet setup consistent everywhere
a9728db
Modify cab definition to pass missing as none
ab22ced
remove curly braces from command
0b568af
All workers -> python-ext flavour
0831116
Deprecate agroclean deconv mode
f090d04
Changes to weighting
c8b9488
Test stricter preconditioning for stability
d4760b9
fix for bsmooth per scan plots
e2b1374
Make detrending optional in bsmooth
9699298
clean modifications
f2725db
robust kalman interpolation
759096c
landmanbester and others added 27 commits February 19, 2024 14:18
add noise in test_polproducts test
b4a25e0
depend on latest QC release. remove ipdb from requirements
c45883c
restore old QC dependency
8a010b4
remove depencies installed by qc
59e1d3a
depend on QuartiCal[degrid]
2f920fe
qc on pypi, manually install ducc0
500e8e6
reformat uncabbedcabs.yml
6673b83
don't jit subminor, remove parallel
4b0509f
add sympy to dependencies
2e8d9ed
no fastmath in jit
1889d09
don't cache lambdified functions
4afef38
missed cache=True
147156b
track bestim in clean
d23b519
diverge_count typo
720861f
dims -> sizes
a42641f
tweak fits output names for clean
f50e57c
Allow explicit path to xds in grid worker
b00aed9
diverging -> diverge_count in clean
0eeb297
replace _ with - in config, use . instead of - for stimela cab names
cbada3d
manually replace - with _ in defaults dict when creating parser
c08f709
change relative include to include from (.). Subs - for _ in tests
64dc3f4
changes to config
d642ef2
pin stimela
1eb16eb
move return statement into try except to print beam interp warning in…
891d30c 
…stead of bombing
@landmanbester
Simpler wavelet implementation with vertical parallelism (#93)
a545cfd 
* replace old wavelet code with simplified 2D versions

* incorporate new wavelets and psi operator

---------

Co-authored-by: landmanbester <[email protected]>
replace generated_jit with overloads
83e44cf
add 3.9 and 3.11 to testing matrix. Unpin numba
909c98b
@landmanbester landmanbester merged commit e51475b into main Mar 15, 2024
4 checks passed
@landmanbester landmanbester mentioned this pull request Mar 15, 2024
Closed
@landmanbester landmanbester deleted the awskube branch May 2, 2024 13:21
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@landmanbester