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Pull requests: ratschlab/metagraph

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Pull requests list

Optimize querying DBGSSHash
#507 opened Dec 6, 2024 by hmusta Loading…
Use RowDiff with DBGHashFast in test_aligner_labeled
#505 opened Oct 15, 2024 by adamant-pwn Loading…
21
Option to annotate a representative node from each monochromatic contig
#500 opened Oct 2, 2024 by hmusta Loading…
1
Place all relevant headers in /include during installation
#489 opened Jun 20, 2024 by adamant-pwn Loading…
6
Count-based differential assembly
#487 opened Jun 11, 2024 by hmusta Loading…
Use BOSS indexing in DBGSuccinct + make RowDiff independent
#484 opened May 22, 2024 by adamant-pwn Loading…
72
Less stringent alignment and seed filtering
#453 opened Jun 5, 2023 by hmusta • Draft
5 tasks done
2
Support outputting alignments in GAF format
#384 opened Feb 7, 2022 by hmusta • Draft
4
implement the taxonomic classification with queries on the annotation matrix
#347 opened Aug 2, 2021 by heracle Loading…
11
support for multiple successors at forks
#329 opened Jun 16, 2021 by karasikov Loading…
8
mark rd successors only in forks
#308 opened Apr 2, 2021 by karasikov Loading…
Alignment and query cleanups
#271 opened Jan 19, 2021 by karasikov • Draft
Lower RAM implementation of slice_columns for BRWT
#226 opened Oct 26, 2020 by hmusta • Draft
10
Add checkpointing to metagraph build
#197 opened Sep 8, 2020 by danieldanciu • Draft
46
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