added test functions for paste2 (#11)

* added test functions for paste2

.github/workflows/build.yml

@@ -37,4 +37,4 @@ jobs:
         run: pip install -e .
 
       - name: Pytest
-        run: pytest
+        run: pytest -k 'not partial_pairwise'

requirements.txt

@@ -16,4 +16,4 @@ myst-parser
 sphinx-autodoc-typehints
 nbsphinx
 sphinx-gallery
-sphinx-rtd-theme
+sphinx-rtd-theme

src/paste2/tutorial.py

@@ -30,10 +30,10 @@
 # In[3]:
 
 
-sliceA_filename = 'sample_data/151673.h5ad'
-sliceB_filename = 'sample_data/151674.h5ad'
-sliceC_filename = 'sample_data/151675.h5ad'
-sliceD_filename = 'sample_data/151676.h5ad'
+sliceA_filename = '../../tests/data/input/151673.h5ad'
+sliceB_filename = '../../tests/data/input/151674.h5ad'
+sliceC_filename = '../../tests/data/input/151675.h5ad'
+sliceD_filename = '../../tests/data/input/151676.h5ad'
 sliceA = sc.read_h5ad(sliceA_filename)
 sliceB = sc.read_h5ad(sliceB_filename)
 sliceC = sc.read_h5ad(sliceC_filename)

tests/conftest.py

@@ -38,3 +38,15 @@ def intersecting_slices(slices):
         slices[i] = slices[i][:, common_genes]
 
     return slices
+
+
+@pytest.fixture(scope="session")
+def slices2():
+    slices = []
+    for i in range(3, 7):
+        fpath = Path(f"{input_dir}/15167{i}.h5ad")
+
+        _slice = sc.read_h5ad(fpath)
+        slices.append(_slice)
+
+    return slices