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creating score, truth, gene, population sets
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Jim Havrilla
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Jul 11, 2018
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| #create score sets | ||
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| cd ../score-sets/GRCh37/CADD | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/CCR | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/DANN | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/GERP | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/MCAP | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/MPC | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/MTR | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/REVEL | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/RVIS | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/VVP | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/aloft | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/fathmm | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/fitcons | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/metasvm | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/mis_Z | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/pLI | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/phastCons | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/phylop | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/polyphen2 | ||
| bash make.sh | ||
| cd - | ||
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| cd ../score-sets/GRCh37/sift | ||
| bash make.sh | ||
| cd - | ||
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| # make truth sets | ||
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| cd ../truth-sets/GRCh37/clinvar | ||
| bash make.sh | ||
| cd - | ||
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| cd ../truth-sets/GRCh37/homsy | ||
| bash make.sh | ||
| cd - | ||
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| cd ../truth-sets/GRCh37/samocha | ||
| bash make.sh | ||
| cd - | ||
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| cd ../truth-sets/GRCh37/wellderly | ||
| bash make.sh | ||
| cd - | ||
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| cd ../truth-sets/GRCh37/wigler-autism | ||
| bash make.sh | ||
| cd - | ||
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| # make gene sets | ||
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| cd ../gene-sets/GRCh37/ad_genes/ | ||
| bash make.sh | ||
| cd - | ||
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| cd ../gene-sets/GRCh37/hi_genes/ | ||
| bash make.sh | ||
| cd - | ||
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| # make population sets | ||
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| cd ../scripts/gnomad | ||
| bash makeexac.sh | ||
| bash makegnomad.sh | ||
| cd - |