fix #265: 24.10.x causes stackoverflowerror

Makefile

@@ -3,11 +3,13 @@ PROJECT ?= nf-quilt
 WRITE_BUCKET ?= udp-spec
 FRAGMENT ?= &path=.
 NF_DIR ?= ../nextflow
+NF_GIT ?= $(NF_DIR)/nextflow
 NF_BIN ?= ./launch.sh
 PID ?= $$$$
 PIPELINE ?= sarek
 QUERY ?= ?Name=$(USER)&Owner=Kevin+Moore&Date=2023-03-07&Type=CRISPR&Notebook+URL=http%3A%2F%2Fexample.com
 VERSION ?= $(shell grep 'Plugin-Version' plugins/$(PROJECT)/src/resources/META-INF/MANIFEST.MF | awk '{ print $$2 }')
+NXF_VER ?= $(shell cat VERSION)
 TEST_URI ?= quilt+s3://$(WRITE_BUCKET)$(QUERY)\#package=nf-quilt/dest-$(VERSION)$(FRAGMENT)
 PIPE_OUT ?=  quilt+s3://$(WRITE_BUCKET)\#package=$(PROJECT)/$(PIPELINE)
 S3_BASE = s3://$(WRITE_BUCKET)/$(PROJECT)
@@ -107,6 +109,12 @@ $(PIPELINE): $(NF_BIN) install
 	$(NF_BIN) pull nf-core/$(PIPELINE)
 	$(NF_BIN) run nf-core/$(PIPELINE) -profile test,docker -plugins $(PROJECT)@$(VERSION) --outdir "$(PIPE_OUT)"
 
+fetchngs: $(NF_GIT)
+	NXF_VER=$(NXF_VER) $(NF_BIN) run quiltdata/fetchngs -r master -profile test,docker --input wf/ids.csv --outdir "s3://$(WRITE_BUCKET)/nf-quilt/fetchngs"
+
+nf-git-ver: $(NF_GIT)
+	NXF_VER=$(NXF_VER) $(NF_GIT) -v
+
 #
 # Show dependencies
 #

VERSION

@@ -1 +1 @@
-23.04.3
+24.10.2

plugins/nf-quilt/src/main/nextflow/quilt/jep/QuiltPackage.groovy

@@ -77,8 +77,8 @@ class QuiltPackage {
     static String toJson(Map dict) {
         List<String> entries = dict.collect { key, value ->
             String prefix = JsonOutput.toJson(key)
-            String suffix = "toJson.error: ${value}"
-            log.debug("QuiltPackage.toJson: ${prefix} [${suffix.length()}]")
+            log.debug("toJson.${key}: ${value}")
+            String suffix = "toJson.error[${value}]"
             try {
                 suffix = JsonOutput.toJson(value)
             }

wf/ids.csv

@@ -0,0 +1 @@
+SRR9984183