Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
On top of #202
You need fresh version of https://github.com/quiltdata/quilt-rs/pull/187: there are slightly different methods names, because
Quilt
now isJava_nextflow_quilt_jep_Quilt
quilt_rs
repo,git pull
latest change of thejni
branch. Thencargo build
. It will buildlibquilt_rs.so
intarget/debug
cd plugins/nf-quilt/src/main/nextflow/quilt/jep
System.load
inQuilt.java
to the correct location of thelibquilt_rs.so
javac Quilt.java
. It will compileQuilt.class
cd - && make check
Tests are failing because they rely on one directories' structure, but
quilt_rs
uses different directories. I couldn't manage to fix them.