Bump quiltcore. Handle WorkflowException.

quiltdata · Oct 5, 2023 · 2dd1d94 · 2dd1d94
1 parent 6575615
commit 2dd1d94
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/plugins/nf-quilt/build.gradle b/plugins/nf-quilt/build.gradle
@@ -61,7 +61,7 @@ ext{
 
 dependencies {
     // quiltcore
-    implementation 'com.quiltdata.quiltcore:quiltcore:0.0.3'
+    implementation 'com.quiltdata.quiltcore:quiltcore:0.0.4'
 
     // This dependency is exported to consumers, that is to say found on their compile classpath.
     compileOnly "io.nextflow:nextflow:$nextflowVersion"

diff --git a/plugins/nf-quilt/src/main/nextflow/quilt/jep/QuiltPackage.groovy b/plugins/nf-quilt/src/main/nextflow/quilt/jep/QuiltPackage.groovy
@@ -34,6 +34,7 @@ import com.quiltdata.quiltcore.Namespace
 import com.quiltdata.quiltcore.Manifest
 import com.quiltdata.quiltcore.key.LocalPhysicalKey
 import com.quiltdata.quiltcore.key.S3PhysicalKey
+import com.quiltdata.quiltcore.workflows.WorkflowException
 
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.fasterxml.jackson.databind.node.ObjectNode;
@@ -258,6 +259,8 @@ class QuiltPackage {
 
         try {
             m.push(namespace, "nf-quilt:${today()}-${msg}", parsed.workflowName)
+        } catch (WorkflowException e) {
+            return 1
         } catch (IOException e) {
             return 1
         }