Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

extract important Illumina adapter sequences from merged.fasta adapter file #9

Open
wants to merge 16 commits into
base: qbicStefanC-_--extract
Choose a base branch
from
Open

extract important Illumina adapter sequences from merged.fasta adapter file #9

wants to merge 16 commits into from

Commits on Jun 27, 2016

  1. Merge pull request #8 from qbicsoftware/qbicStefanC-_--extract 

    add '--extract' parameter to fastqc commands
    @aseyboldt
    aseyboldt authored Jun 27, 2016
    Configuration menu
    Copy the full SHA
    d48a4b0 View commit details
    Browse the repository at this point in the history

Commits on Sep 9, 2016

  1. Load bowtie2 in jobscript

    @aseyboldt
    aseyboldt committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    d7bfcd7 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' of github.com:qbicsoftware/rnaseq

    @aseyboldt
    aseyboldt committed Sep 9, 2016
    Configuration menu
    Copy the full SHA
    4537ea0 View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2016

  1. Update Snakefile

    @qbicStefanC
    qbicStefanC authored Nov 8, 2016
    Configuration menu
    Copy the full SHA
    dfe0aa7 View commit details
    Browse the repository at this point in the history

  2. Update Snakefile

    @qbicStefanC
    qbicStefanC authored Nov 8, 2016
    Configuration menu
    Copy the full SHA
    fe25802 View commit details
    Browse the repository at this point in the history

Commits on Nov 11, 2016

  1. Merge pull request #10 from qbicsoftware/qbicStefanC-subset-fasta-fil… 

    …e_for_illumina_adapters

Update Snakefile
    @qbicStefanC
    qbicStefanC authored Nov 11, 2016
    Configuration menu
    Copy the full SHA
    041b484 View commit details
    Browse the repository at this point in the history

Commits on May 4, 2018

  1. Update Snakefile

    Timo Lucas authored May 4, 2018
    Configuration menu
    Copy the full SHA
    cd28335 View commit details
    Browse the repository at this point in the history

  2. Software Versions Rule 

    Added a rule to display the versions of the software used by the workflow.
It simply runs the used tools with --version flag (if possible) and stores the info in a text file in the Summary folder.
As htseq-count does not provide the --version flag I just took the last line when calling it without parameters.
    Timo Lucas authored May 4, 2018
    Configuration menu
    Copy the full SHA
    61cb543 View commit details
    Browse the repository at this point in the history

  3. indentation 

    Fixed small indentation error
    Timo Lucas authored May 4, 2018
    Configuration menu
    Copy the full SHA
    cffe75e View commit details
    Browse the repository at this point in the history

  4. Update Snakefile

    Timo Lucas authored May 4, 2018
    Configuration menu
    Copy the full SHA
    111dd7f View commit details
    Browse the repository at this point in the history

  5. Update Snakefile

    Timo Lucas authored May 4, 2018
    Configuration menu
    Copy the full SHA
    b2fba36 View commit details
    Browse the repository at this point in the history

Commits on May 18, 2018

  1. Merge pull request #11 from qbicsoftware/display-tool-versions 

    Display tool versions
    @qbicStefanC
    qbicStefanC authored May 18, 2018
    Configuration menu
    Copy the full SHA
    911a557 View commit details
    Browse the repository at this point in the history

  2. Update README.md

    Timo Lucas authored May 18, 2018
    Configuration menu
    Copy the full SHA
    4fb1afa View commit details
    Browse the repository at this point in the history

Commits on Aug 13, 2018

  1. Update README.md

    @qbicStefanC
    qbicStefanC authored Aug 13, 2018
    Configuration menu
    Copy the full SHA
    f56e69b View commit details
    Browse the repository at this point in the history

  2. Merge pull request #13 from qbicsoftware/update-readme 

    Update README.md
    @qbicStefanC
    qbicStefanC authored Aug 13, 2018
    Configuration menu
    Copy the full SHA
    f966b04 View commit details
    Browse the repository at this point in the history

Commits on Oct 23, 2018

  1. Update jobscript.sh 

    updated samtools load of module
    @qbicStefanC
    qbicStefanC authored Oct 23, 2018
    Configuration menu
    Copy the full SHA
    8cc7f75 View commit details
    Browse the repository at this point in the history