restore changes to yml

.github/workflows/ruff_linter.yml

@@ -65,7 +65,15 @@ jobs:
     - name: Regular lint check
       if: github.event_name != 'workflow_dispatch'
       run: |
-        sh scripts/run_ruff.sh --check
+        ruff check .
+        # --isolated is used to skip the allowlist at all so this applies to all files
+        # please be careful when using this large changes means everyone needs to rebase
+        ruff check --isolated --select F821,F823,W191
+        ruff check --select F,I
+        ruff format --check || {
+          echo "Ruff check failed, please try again after running 'ruff format'."
+          exit 1
+        }
 
     - name: Apply fixes to PR
       if: github.event_name == 'workflow_dispatch'
@@ -74,7 +82,8 @@ jobs:
         git config --global user.email 'github-actions[bot]@users.noreply.github.com'
         
         # Apply fixes
-        sh scripts/run_ruff.sh
+        ruff check --select F,I --fix
+        ruff format .
         
         # Commit and push if there are changes
         if [[ -n "$(git status --porcelain)" ]]; then