🔖 0.11.0 (#180)

* Update README.md

* Bump argx to 0.2.10

* Add Dockerfile for codesandbox

* Bump pandas to v2

* Fix linting

* 🔖 0.11.0

* Update CHANGELOG.md

* Fix CI

.codesandbox/Dockerfile

@@ -0,0 +1,7 @@
+FROM python:3.10.12
+
+RUN apt-get update && apt-get install -y fish && \
+    pip install -U pip && \
+    pip install poetry && \
+    poetry config virtualenvs.create false && \
+    chsh -s /usr/bin/fish

.github/workflows/docs.yml

@@ -32,33 +32,33 @@ jobs:
           mkdocs gh-deploy --clean --force
         if: success()
 
-  fix-index:
-    needs: docs
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ["3.10"]
-    steps:
-      - uses: actions/checkout@v3
-        with:
-          ref: gh-pages
-      - name: Fix index.html
-        run: |
-          echo ':: head of index.html - before ::'
-          head index.html
-          sed -i '1,5{/^$/d}' index.html
-          echo ':: head of index.html - after ::'
-          head index.html
-        if: success()
-      - name: Commit changes
-        run: |
-          git config --local user.email "[email protected]"
-          git config --local user.name "GitHub Action"
-          git commit -m "Add changes" -a
-        if: success()
-      - name: Push changes
-        uses: ad-m/github-push-action@master
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          branch: gh-pages
-        if: success()
+  # fix-index:
+  #   needs: docs
+  #   runs-on: ubuntu-latest
+  #   strategy:
+  #     matrix:
+  #       python-version: ["3.10"]
+  #   steps:
+  #     - uses: actions/checkout@v3
+  #       with:
+  #         ref: gh-pages
+  #     - name: Fix index.html
+  #       run: |
+  #         echo ':: head of index.html - before ::'
+  #         head index.html
+  #         sed -i '1,5{/^$/d}' index.html
+  #         echo ':: head of index.html - after ::'
+  #         head index.html
+  #       if: success()
+  #     - name: Commit changes
+  #       run: |
+  #         git config --local user.email "[email protected]"
+  #         git config --local user.name "GitHub Action"
+  #         git commit -m "Add changes" -a
+  #       if: success()
+  #     - name: Push changes
+  #       uses: ad-m/github-push-action@master
+  #       with:
+  #         github_token: ${{ secrets.GITHUB_TOKEN }}
+  #         branch: gh-pages
+  #       if: success()

README.md

@@ -64,11 +64,11 @@ if __name__ == "__main__":
 06-09 23:15:29 I core                  _  ____/__/ /  _  ____/_  /___  _  /|  /
 06-09 23:15:29 I core                  /_/     /___/  /_/     /_____/  /_/ |_/
 06-09 23:15:29 I core
-06-09 23:15:29 I core                              version: 0.10.2
+06-09 23:15:29 I core                              version: 0.11.0
 06-09 23:15:29 I core
-06-09 23:15:29 I core    ╔══════════════════════════════════════════════════════════════════╗
+06-09 23:15:29 I core    ╔═══════════════════════════════════════════════════╗
 06-09 23:15:29 I core    ║                            MYPIPELINE                            ║
-06-09 23:15:29 I core    ╚══════════════════════════════════════════════════════════════════╝
+06-09 23:15:29 I core    ╚═══════════════════════════════════════════════════╝
 06-09 23:15:29 I core    plugins         : verbose v0.7.0
 06-09 23:15:29 I core    # procs         : 2
 06-09 23:15:29 I core    profile         : default
@@ -87,9 +87,9 @@ if __name__ == "__main__":
 06-09 23:15:29 I core    plugin_opts     :
 06-09 23:15:29 I core    template_opts   :
 06-09 23:15:31 I core
-06-09 23:15:31 I core    ╭─────────────────────────────── P1 ───────────────────────────────╮
+06-09 23:15:31 I core    ╭──────────────────────── P1 ───────────────────────╮
 06-09 23:15:31 I core    │ Sort input file                                                  │
-06-09 23:15:31 I core    ╰──────────────────────────────────────────────────────────────────╯
+06-09 23:15:31 I core    ╰──────────────────────────────────────────────────╯
 06-09 23:15:31 I core    P1: Workdir: '/home/pwwang/github/pipen/.pipen/MyPipeline/P1'
 06-09 23:15:31 I core    P1: <<< [START]
 06-09 23:15:31 I core    P1: >>> ['P2']
@@ -99,9 +99,9 @@ if __name__ == "__main__":
                  /home/pwwang/github/pipen/.pipen/MyPipeline/P1/0/output/intermediate.txt
 06-09 23:15:33 I verbose P1: Time elapsed: 00:00:02.018s
 06-09 23:15:33 I core
-06-09 23:15:33 I core    ╭═══════════════════════════════ P2 ═══════════════════════════════╮
+06-09 23:15:33 I core    ╭════════════════════════ P2 ═══════════════════════╮
 06-09 23:15:33 I core    ║ Paste line number                                                ║
-06-09 23:15:33 I core    ╰══════════════════════════════════════════════════════════════════╯
+06-09 23:15:33 I core    ╰══════════════════════════════════════════════════╯
 06-09 23:15:33 I core    P2: Workdir: '/home/pwwang/github/pipen/.pipen/MyPipeline/P2'
 06-09 23:15:33 I core    P2: <<< ['P1']
 06-09 23:15:33 I core    P2: >>> [END]

docs/CHANGELOG.md

@@ -1,5 +1,11 @@
 # Change Log
 
+## 0.11.0
+
+- Add Dockerfile for codesandbox
+- Bump pandas to v2
+- Bump argx to 0.2.10
+
 ## 0.10.6
 
 - 🐛 Fix "DeprecationWarning: np.find_common_type is deprecated" from pandas (due to numpy 1.25 update)

pipen/channel.py

@@ -184,9 +184,14 @@ def expand_dir(
     assert data.shape[0] == 1, "Can only expand a single row DataFrame."
     col_loc = col if isinstance(col, int) else data.columns.get_loc(col)
     full_pattern = f"{data.iloc[0, col_loc]}/{pattern}"
-    expanded = Channel.from_glob(full_pattern, ftype, sortby, reverse)
-    ret = pandas.concat([data] * expanded.size, axis=0)
-    ret[data.columns[col_loc]] = expanded.values
+    expanded = Channel.from_glob(
+        full_pattern,
+        ftype,
+        sortby,
+        reverse,
+    ).iloc[:, 0]
+    ret = pandas.concat([data] * expanded.size, axis=0, ignore_index=True)
+    ret.loc[:, col_loc] = expanded.values
     return ret.reset_index(drop=True)
 
 

pipen/version.py

@@ -1,3 +1,3 @@
 """Provide version of pipen"""
 
-__version__ = "0.10.6"
+__version__ = "0.11.0"