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This is a fairly dirty commit that implements the conclusions from #30 (comment) This shows the path forward, but it does it by cutting quite a few corners that need fixing in subsequent changes (e.g., dataset can only have annexed files right now). However, none of these missing changes should be problematic -- merely laborious. I do not know when I can come back to this, to I prefer committing this state. it should pass all tests.
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6 changes: 6 additions & 0 deletions
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-dataserviceprops.json
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| @@ -0,0 +1,6 @@ | ||
| { | ||
| "meta_id": "annex:0b76362c-aa27-11ee-be29-b3b123281259", | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259", | ||
| "endpoint_url": "s3://obj.example.com/v3", | ||
| "@type": "AnnexRemoteSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-dataserviceprops.rdf
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| @prefix annex: <https://concepts.datalad.org/namespace/annex-uuid/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
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| annex:0b76362c-aa27-11ee-be29-b3b123281259 a dlco:AnnexRemoteSE ; | ||
| dlco:endpoint_url "s3://obj.example.com/v3"^^xsd:anyURI ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> . | ||
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-dataserviceprops.yaml
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| meta_id: annex:0b76362c-aa27-11ee-be29-b3b123281259 | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 | ||
| # uses a standard DataService slot to encode the remote | ||
| # access target | ||
| endpoint_url: s3://obj.example.com/v3 |
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-minimal.json
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| { | ||
| "meta_id": "annex:0b76362c-aa27-11ee-be29-b3b123281259", | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259", | ||
| "@type": "AnnexRemoteSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-minimal.rdf
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| @prefix annex: <https://concepts.datalad.org/namespace/annex-uuid/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
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| annex:0b76362c-aa27-11ee-be29-b3b123281259 a dlco:AnnexRemoteSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> . | ||
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src/examples/datalad-dataset-version-schema/AnnexRemoteSE-minimal.yaml
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| @@ -0,0 +1,2 @@ | ||
| meta_id: annex:0b76362c-aa27-11ee-be29-b3b123281259 | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-full.json
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| @@ -0,0 +1,37 @@ | ||
| { | ||
| "is_version_of": { | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259" | ||
| }, | ||
| "has_annex_remote": { | ||
| "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf": { | ||
| "meta_id": "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf", | ||
| "uuid": "7e0bf3e7-7d46-4093-813e-b4009826c3bf" | ||
| } | ||
| }, | ||
| "has_part": { | ||
| "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58": { | ||
| "meta_id": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "gitsha": "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "distribution": { | ||
| "qualified_access": { | ||
| "relation": "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf", | ||
| "access_id": "MD5E-s3425--32a617360d10e3dcbfdd0885e8d64ab8.txt" | ||
| }, | ||
| "byte_size": 3425, | ||
| "checksum": { | ||
| "algorithm": "md5", | ||
| "digest": "32a617360d10e3dcbfdd0885e8d64ab8" | ||
| } | ||
| }, | ||
| "meta_type": "dlco:AnnexedFileSE" | ||
| } | ||
| }, | ||
| "qualified_part": [ | ||
| { | ||
| "relation": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "at_location": "README.txt" | ||
| } | ||
| ], | ||
| "meta_type": "dlco:DataladDatasetVersionSE", | ||
| "@type": "DataladDatasetVersionSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-full.rdf
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| @@ -0,0 +1,33 @@ | ||
| @prefix DCAT: <http://www.w3.org/ns/dcat#> . | ||
| @prefix annex: <https://concepts.datalad.org/namespace/annex-uuid/> . | ||
| @prefix dct: <http://purl.org/dc/terms/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix gitsha: <https://concepts.datalad.org/namespace/gitsha/> . | ||
| @prefix prov: <http://www.w3.org/ns/prov#> . | ||
| @prefix spdx: <http://spdx.org/rdf/terms#> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
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| annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf a dlco:AnnexRemoteSE ; | ||
| dlco:uuid "7e0bf3e7-7d46-4093-813e-b4009826c3bf"^^<http://purl.obolibrary.org/obo/NCIT_C54100> . | ||
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| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 dlco:distribution [ a dlco:AnnexDistributionSE ; | ||
| spdx:checksum [ a spdx:Checksum ; | ||
| spdx:algorithm "md5"^^xsd:anyURI ; | ||
| spdx:checksumValue "32a617360d10e3dcbfdd0885e8d64ab8"^^xsd:hexBinary ] ; | ||
| DCAT:byteSize "3425"^^xsd:nonNegativeInteger ; | ||
| dlco:qualified_access [ a dlco:QualifiedAnnexAccessSE ; | ||
| dct:relation annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf ; | ||
| dlco:access_id "MD5E-s3425--32a617360d10e3dcbfdd0885e8d64ab8.txt" ] ] ; | ||
| dlco:gitsha "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58"^^dlco:sha1 ; | ||
| dlco:meta_type "dlco:AnnexedFileSE"^^xsd:anyURI . | ||
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| [] dct:hasPart gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| DCAT:isVersionOf [ a dlco:DataladDatasetSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> ] ; | ||
| dlco:has_annex_remote annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf ; | ||
| dlco:meta_type "dlco:DataladDatasetVersionSE"^^xsd:anyURI ; | ||
| dlco:qualified_part [ a dlco:QualifiedPartSE ; | ||
| dct:relation gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| prov:atLocation "README.txt"^^dlco:PosixRelPath ] . | ||
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7 changes: 7 additions & 0 deletions
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-minimal.json
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|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| { | ||
| "is_version_of": { | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259" | ||
| }, | ||
| "meta_type": "dlco:DataladDatasetVersionSE", | ||
| "@type": "DataladDatasetVersionSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-minimal.rdf
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,9 @@ | ||
| @prefix DCAT: <http://www.w3.org/ns/dcat#> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
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| [] DCAT:isVersionOf [ a dlco:DataladDatasetSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> ] ; | ||
| dlco:meta_type "dlco:DataladDatasetVersionSE"^^xsd:anyURI . | ||
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-minimal.yaml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| is_version_of: | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-availability.json
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| @@ -0,0 +1,26 @@ | ||
| { | ||
| "is_version_of": { | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259" | ||
| }, | ||
| "has_annex_remote": { | ||
| "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf": { | ||
| "meta_id": "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf", | ||
| "uuid": "7e0bf3e7-7d46-4093-813e-b4009826c3bf" | ||
| } | ||
| }, | ||
| "has_part": { | ||
| "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58": { | ||
| "meta_id": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "gitsha": "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "distribution": { | ||
| "qualified_access": { | ||
| "relation": "annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf", | ||
| "access_id": "MD5E-s3425--32a617360d10e3dcbfdd0885e8d64ab8.txt" | ||
| } | ||
| }, | ||
| "meta_type": "dlco:AnnexedFileSE" | ||
| } | ||
| }, | ||
| "meta_type": "dlco:DataladDatasetVersionSE", | ||
| "@type": "DataladDatasetVersionSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-availability.rdf
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,24 @@ | ||
| @prefix DCAT: <http://www.w3.org/ns/dcat#> . | ||
| @prefix annex: <https://concepts.datalad.org/namespace/annex-uuid/> . | ||
| @prefix dct: <http://purl.org/dc/terms/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix gitsha: <https://concepts.datalad.org/namespace/gitsha/> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
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| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 dlco:distribution [ a dlco:AnnexDistributionSE ; | ||
| dlco:qualified_access [ a dlco:QualifiedAnnexAccessSE ; | ||
| dct:relation annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf ; | ||
| dlco:access_id "MD5E-s3425--32a617360d10e3dcbfdd0885e8d64ab8.txt" ] ] ; | ||
| dlco:gitsha "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58"^^dlco:sha1 ; | ||
| dlco:meta_type "dlco:AnnexedFileSE"^^xsd:anyURI . | ||
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| annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf a dlco:AnnexRemoteSE ; | ||
| dlco:uuid "7e0bf3e7-7d46-4093-813e-b4009826c3bf"^^<http://purl.obolibrary.org/obo/NCIT_C54100> . | ||
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| [] dct:hasPart gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| DCAT:isVersionOf [ a dlco:DataladDatasetSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> ] ; | ||
| dlco:has_annex_remote annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf ; | ||
| dlco:meta_type "dlco:DataladDatasetVersionSE"^^xsd:anyURI . | ||
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-availability.yaml
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| @@ -0,0 +1,13 @@ | ||
| is_version_of: | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 | ||
| has_annex_remote: | ||
| annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf: | ||
| uuid: 7e0bf3e7-7d46-4093-813e-b4009826c3bf | ||
| has_part: | ||
| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58: | ||
| meta_type: dlco:AnnexedFileSE | ||
| gitsha: b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 | ||
| distribution: | ||
| qualified_access: | ||
| access_id: MD5E-s3425--32a617360d10e3dcbfdd0885e8d64ab8.txt | ||
| relation: annex:7e0bf3e7-7d46-4093-813e-b4009826c3bf |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-location.json
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|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| { | ||
| "is_version_of": { | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259" | ||
| }, | ||
| "has_part": { | ||
| "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58": { | ||
| "meta_id": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "gitsha": "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "meta_type": "dlco:AnnexedFileSE" | ||
| } | ||
| }, | ||
| "qualified_part": [ | ||
| { | ||
| "relation": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "at_location": "README.txt" | ||
| } | ||
| ], | ||
| "meta_type": "dlco:DataladDatasetVersionSE", | ||
| "@type": "DataladDatasetVersionSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-location.rdf
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| @prefix DCAT: <http://www.w3.org/ns/dcat#> . | ||
| @prefix dct: <http://purl.org/dc/terms/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix gitsha: <https://concepts.datalad.org/namespace/gitsha/> . | ||
| @prefix prov: <http://www.w3.org/ns/prov#> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
|
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| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 dlco:gitsha "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58"^^dlco:sha1 ; | ||
| dlco:meta_type "dlco:AnnexedFileSE"^^xsd:anyURI . | ||
|
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| [] dct:hasPart gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| DCAT:isVersionOf [ a dlco:DataladDatasetSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> ] ; | ||
| dlco:meta_type "dlco:DataladDatasetVersionSE"^^xsd:anyURI ; | ||
| dlco:qualified_part [ a dlco:QualifiedPartSE ; | ||
| dct:relation gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| prov:atLocation "README.txt"^^dlco:PosixRelPath ] . | ||
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-location.yaml
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| @@ -0,0 +1,11 @@ | ||
| is_version_of: | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 | ||
| has_part: | ||
| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58: | ||
| meta_type: dlco:AnnexedFileSE | ||
| gitsha: b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 | ||
| qualified_part: | ||
| - at_location: README.txt | ||
| # key aspect is this reference-by-id of the inline part specification | ||
| # above | ||
| relation: gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-types.json
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| { | ||
| "is_version_of": { | ||
| "uuid": "0b76362c-aa27-11ee-be29-b3b123281259" | ||
| }, | ||
| "has_part": { | ||
| "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58": { | ||
| "meta_id": "gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "gitsha": "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58", | ||
| "meta_type": "dlco:AnnexedFileSE" | ||
| } | ||
| }, | ||
| "meta_type": "dlco:DataladDatasetVersionSE", | ||
| "@type": "DataladDatasetVersionSE" | ||
| } |
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-types.rdf
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| @prefix DCAT: <http://www.w3.org/ns/dcat#> . | ||
| @prefix dct: <http://purl.org/dc/terms/> . | ||
| @prefix dlco: <https://concepts.datalad.org/ontology/> . | ||
| @prefix gitsha: <https://concepts.datalad.org/namespace/gitsha/> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
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| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 dlco:gitsha "b94ef1797f7bfc1ac979be122e1b538bbb0d1d58"^^dlco:sha1 ; | ||
| dlco:meta_type "dlco:AnnexedFileSE"^^xsd:anyURI . | ||
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| [] dct:hasPart gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 ; | ||
| DCAT:isVersionOf [ a dlco:DataladDatasetSE ; | ||
| dlco:uuid "0b76362c-aa27-11ee-be29-b3b123281259"^^<http://purl.obolibrary.org/obo/NCIT_C54100> ] ; | ||
| dlco:meta_type "dlco:DataladDatasetVersionSE"^^xsd:anyURI . | ||
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src/examples/datalad-dataset-version-schema/DataladDatasetVersionSE-part-types.yaml
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| is_version_of: | ||
| uuid: 0b76362c-aa27-11ee-be29-b3b123281259 | ||
| has_part: | ||
| gitsha:b94ef1797f7bfc1ac979be122e1b538bbb0d1d58: | ||
| # this type-designator slot determines the object type used to | ||
| # interpret this inline record | ||
| meta_type: dlco:AnnexedFileSE | ||
| gitsha: b94ef1797f7bfc1ac979be122e1b538bbb0d1d58 |
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src/examples/datalad-dataset-version-schema/MonolithicDataladDatasetVersion-draft.json
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