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Add Seurat functions to R SDK #45

Add Seurat functions to R SDK

Add Seurat functions to R SDK #45

Workflow file for this run

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
environment: build-test
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
PLUTO_API_TOKEN: ${{ secrets.PLUTO_API_TOKEN }}
PLUTO_TEST_API_TOKEN: ${{ secrets.PLUTO_TEST_API_TOKEN }}
PLUTO_ENV: ${{ vars.PLUTO_ENV }}
PLUTO_API_STAGING: ${{ vars.PLUTO_API_STAGING }}
PLUTO_API_PROD: ${{ vars.PLUTO_API_PROD }}
PLUTO_INVALID_API_TOKEN: ${{ vars.PLUTO_INVALID_API_TOKEN }}
EMPTY_PROJECT_ID: ${{ vars.EMPTY_PROJECT_ID }}
NONEMPTY_PROJECT_ID: ${{ vars.NONEMPTY_PROJECT_ID }}
EXPERIMENT_ID_RNASEQ: ${{ vars.EXPERIMENT_ID_RNASEQ }}
EXPERIMENT_ID_CUTANDRUN: ${{ vars.EXPERIMENT_ID_CUTANDRUN }}
EXPERIMENT_ID_MOD: ${{ vars.EXPERIMENT_ID_MOD }}
EXPERIMENT_ID_SCRNASEQ: ${{ vars.EXPERIMENT_ID_SCRNASEQ }}
PLOT_ID_PCA: ${{ vars.PLOT_ID_PCA }}
PLOT_ID_DE_VOLCANO_V2: ${{ vars.PLOT_ID_DE_VOLCANO_V2 }}
PLOT_ID_DB_VOLCANO_V2: ${{ vars.PLOT_ID_DB_VOLCANO_V2 }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v3
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true