2211 refactor cw

.gitignore

@@ -1,4 +1,140 @@
-__pycache__
-*~
-#*#
-.DS_Store
+# project-specific
+.vscode
+.DS*
+._.DS*
+*.zip
+*.png
+
+# hide data and output plots for the time being
+data/GIS
+plots
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

setup.py

@@ -0,0 +1,12 @@
+from setuptools import setup, find_packages
+
+setup(
+    name='uafgi',
+    version='0.0.1',
+    url='https://github.com/pism/uafgi',
+    author='Elizabeth Fischer',
+    author_email='[email protected]',
+    description='Some tools for internal use in in research at UAF/GI',
+    packages=find_packages(),    
+    python_requires='>=3.8',
+)

tests/test_imports.py

@@ -0,0 +1,104 @@
+from __future__ import print_function
+from cdo import Cdo
+# from gdal import ogr, osr DEPRECATED
+from osgeo import ogr, osr, gdal 
+from getpass import getpass
+from numpy import ndarray, asarray
+from osgeo import gdal
+from osgeo import ogr, gdal
+from osgeo import ogr, osr
+from osgeo import osr
+from osgeo import osr, ogr, gdal
+from setuptools import setup, find_packages
+from uafgi import checksum, giutil
+from uafgi import earthdata
+from uafgi import ioutil
+## from uafgi.functional import *  DEPRECATED; also, a *-import: NOT PYTHONIC
+from uafgi.util import functional
+from uafgi.util import cdoutil, ncutil, functional, gdalutil, ogrutil
+from uafgi.util import functional, cfutil, gdalutil
+from uafgi.util import functional, ogrutil, cfutil, ncutil, gisutil
+from uafgi.util import gdalutil, osrutil, pdutil
+from uafgi.util import gicollections
+from uafgi.util import gicollections, giutil
+from uafgi.util import gisutil
+from uafgi.util import ioutil
+from uafgi.util import ioutil, gicollections
+from uafgi.util import ncutil, giutil
+from uafgi.util import pathutil, gicollections
+from uafgi.util import shputil
+from uafgi.util.checksum import hashup
+from urllib.error import HTTPError, URLError
+from urllib.parse import urlparse
+from urllib.request import urlopen, Request, build_opener, HTTPCookieProcessor
+# from urllib2 import urlopen, Request, HTTPError, URLError, build_opener, HTTPCookieProcessor - 
+# DEPRECATED in Python3. Use urllib. See https://stackoverflow.com/questions/2792650/import-error-no-module-name-urllib2 
+from urllib import HTTPError, URLError, build_opener, HTTPCookieProcessor, urlopen
+# from urlparse import urlparse - DEPRECATED in Python3. Use urlparse
+from urllib import urlparse 
+import argparse
+import base64
+import bisect
+import cartopy.crs
+import cartopy.geodesic
+import cf_units
+import collections
+import collections, re
+import collections.abc
+import contextlib
+import copy
+import datetime
+# import dggs.data <-- only used for WRF, not our ERA5 environment 
+import dill
+import doctest
+import filecmp
+import functools
+import getopt
+import glob
+import hashlib
+import importlib
+import inspect
+import itertools
+import json
+import json, subprocess
+import math
+import matplotlib
+import matplotlib.cm
+import matplotlib.colors
+import matplotlib.font_manager
+import matplotlib.pyplot as plt
+import netCDF4
+import netCDF4, cf_units
+import netrc
+import numpy as np
+import operator
+import os
+import os, pickle
+import os, stat
+import os.path
+import pandas as pd
+import pathlib
+import pickle
+import pyproj
+import pytest
+import re
+import requests
+import scipy.interpolate
+import scipy.stats
+import shapefile
+import shapely
+import shapely.geometry
+import shapely.ops
+import shutil
+import signal
+import ssl
+import string
+import struct
+import subprocess
+import sys
+import tempfile
+import time
+import types
+# import uafgi.indexing <-- this does not exist
+import weakref
+import xml.etree.ElementTree as ET