Merge branch '2481-bug-the-result-of-derive_param_tte-depends-on-the-…

…sort-order-of-the-input' of https://github.com/pharmaverse/admiral into 2481-bug-the-result-of-derive_param_tte-depends-on-the-sort-order-of-the-input

.Rbuildignore

@@ -28,6 +28,7 @@
 ^\.lycheeignore$
 ^staged_dependencies.yaml$
 ^inst/dev_dependencies.R$
-^\.devcontainer$
 ^vignettes/articles$
 ^inst/cheatsheet$
+^data-raw$
+^doc$

.github/CODE_OF_CONDUCT.md

@@ -21,5 +21,5 @@ Instances of abusive, harassing, or otherwise unacceptable behavior may be repor
 opening an issue or contacting one or more of the project maintainers.
 
 This Code of Conduct is adapted from the Contributor Covenant 
-(http://contributor-covenant.org), version 1.0.0, available at 
-http://contributor-covenant.org/version/1/0/0/
+(http://www.contributor-covenant.org), version 1.0.0, available at 
+http://www.contributor-covenant.org/version/1/0/0/

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,61 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check for Snapshot Testing
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - name: Install Development Versions of Dependencies
+        if: |
+          !(contains(github.event.commits[0].message, '[skip vbump]') ||
+            contains(github.event.head_commit.message, '[skip vbump]') ||
+            github.ref == 'refs/heads/patch'
+          )
+        run: |
+          install.packages("remotes")
+          remotes::install_github("pharmaverse/admiraldev", ref = "main")
+        shell: Rscript {0}
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.gitignore

@@ -54,3 +54,5 @@ admiral*.tgz
 ._.DS_Store
 
 .Rprofile
+/doc/
+/Meta/

.lycheeignore

@@ -7,3 +7,4 @@ https://raw.githubusercontent.com/pharmaverse/admiral/main/inst/cheatsheet/cheat
 https://rsc.niaid.nih.gov/clinical-research-sites/daids-adverse-event-grading-tables
 https://rsc.niaid.nih.gov/sites/default/files/daidsgradingcorrectedv21.pdf
 https://www.fda.gov/media/116737/download
+

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: admiral
 Title: ADaM in R Asset Library
-Version: 1.1.1.9008
+Version: 1.1.1.9028
 Authors@R: c(
     person("Ben", "Straub", , "[email protected]", role = c("aut", "cre")),
     person("Stefan", "Bundfuss", role = "aut",
@@ -70,6 +70,8 @@ Suggests:
     tibble
 VignetteBuilder: 
     knitr
+Remotes: 
+    pharmaverse/admiraldev
 Config/Needs/website: gert
 Config/testthat/edition: 3
 Encoding: UTF-8

NAMESPACE

@@ -100,6 +100,7 @@ export(derive_var_trtdurd)
 export(derive_var_trtemfl)
 export(derive_vars_aage)
 export(derive_vars_atc)
+export(derive_vars_cat)
 export(derive_vars_computed)
 export(derive_vars_crit_flag)
 export(derive_vars_dt)
@@ -253,6 +254,7 @@ importFrom(rlang,as_string)
 importFrom(rlang,call2)
 importFrom(rlang,call_name)
 importFrom(rlang,caller_env)
+importFrom(rlang,cnd_muffle)
 importFrom(rlang,current_env)
 importFrom(rlang,enexpr)
 importFrom(rlang,enexprs)