Closes #2546 Updating ABLFL to Null if not "Y" in derive_var_base()example
#3841
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| # Source: https://github.com/pharmaverse/admiralci | |
| # Common workflows designed for Admiral | |
| # but can be easily used by any other R package | |
| name: admiral CI/CD Workflows | |
| on: | |
| # 'workflow_dispatch' gives you the ability | |
| # to run this workflow on demand, anytime | |
| workflow_dispatch: | |
| # 'push' events are triggered when commits | |
| # are pushed to one of these branches | |
| push: | |
| tags: | |
| - "v*" | |
| branches: | |
| - main | |
| - patch | |
| # 'pull_request' events are triggered when PRs are | |
| # created against one of these target branches. | |
| pull_request: | |
| branches: | |
| - main | |
| - patch | |
| # 'release' events are triggered when... | |
| # you guessed it - when releases are made. | |
| release: | |
| types: [published] | |
| # Docs on concurrency: | |
| # https://docs.github.com/en/actions/using-jobs/using-concurrency | |
| concurrency: | |
| group: admiral-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| R_VERSION: "release" | |
| jobs: | |
| get_r_version: | |
| name: Get R version | |
| runs-on: ubuntu-latest | |
| outputs: | |
| r-version: ${{ steps.get_r_version.outputs.R_VERSION }} | |
| steps: | |
| - name: Get R Version for Downstream Container Jobs | |
| id: get_r_version | |
| run: echo "R_VERSION=$R_VERSION" >> $GITHUB_OUTPUT | |
| shell: bash | |
| style: | |
| name: Code Style | |
| uses: pharmaverse/admiralci/.github/workflows/style.yml@main | |
| if: github.event_name == 'pull_request' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| spellcheck: | |
| name: Spelling | |
| uses: pharmaverse/admiralci/.github/workflows/spellcheck.yml@main | |
| if: github.event_name == 'pull_request' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| validation: | |
| name: Validation | |
| uses: pharmaverse/admiralci/.github/workflows/r-pkg-validation.yml@main | |
| if: github.event_name == 'release' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| check: | |
| name: Check | |
| uses: pharmaverse/admiralci/.github/workflows/r-cmd-check.yml@main | |
| with: | |
| error-on: warning # TODO: find a way to ignore specific notes | |
| if: github.event_name == 'pull_request' | |
| docs: | |
| name: Documentation | |
| uses: pharmaverse/admiralci/.github/workflows/pkgdown.yml@main | |
| if: github.event_name == 'push' || startsWith(github.ref, 'refs/tags/v') | |
| needs: get_r_version | |
| with: | |
| r-version: "release" | |
| skip-multiversion-docs: true | |
| secrets: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| linter: | |
| name: Lint | |
| uses: pharmaverse/admiralci/.github/workflows/lintr.yml@main | |
| needs: get_r_version | |
| if: github.event_name == 'pull_request' | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| links: | |
| name: Links | |
| uses: pharmaverse/admiralci/.github/workflows/links.yml@main | |
| if: github.event_name == 'pull_request' | |
| coverage: | |
| name: Code Coverage | |
| uses: pharmaverse/admiralci/.github/workflows/code-coverage.yml@main | |
| if: > | |
| github.event_name != 'release' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| # Whether to skip code coverage badge creation | |
| # Setting to 'false' will require you to create | |
| # an orphan branch called 'badges' in your repository | |
| skip-coverage-badges: false | |
| man-pages: | |
| name: Man Pages | |
| uses: pharmaverse/admiralci/.github/workflows/man-pages.yml@main | |
| if: github.event_name == 'pull_request' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| templates: | |
| name: Check Templates | |
| uses: pharmaverse/admiralci/.github/workflows/check-templates.yml@main | |
| secrets: inherit | |
| if: github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| vbump: | |
| name: Version Bump 🤜🤛 | |
| if: github.event_name == 'push' | |
| uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main | |
| secrets: | |
| REPO_GITHUB_TOKEN: ${{ secrets.PHARMAVERSE_BOT }} |