Enhancement: Column Mapping Feature #95
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| # Source: https://github.com/pharmaverse/admiralci | |
| # Stripped down version of admiralci checks. Good for | |
| # the developement process. When package is ready to | |
| # be published, revisit and add release-related | |
| # workflows. | |
| name: admiral CI/CD Workflows | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: admiral-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| R_VERSION: "release" | |
| jobs: | |
| get_r_version: | |
| name: Get R version | |
| runs-on: ubuntu-latest | |
| outputs: | |
| r-version: ${{ steps.get_r_version.outputs.R_VERSION }} | |
| steps: | |
| - name: Get R Version for Downstream Container Jobs | |
| id: get_r_version | |
| run: echo "R_VERSION=$R_VERSION" >> $GITHUB_OUTPUT | |
| shell: bash | |
| spellcheck: | |
| name: Spelling | |
| uses: pharmaverse/admiralci/.github/workflows/spellcheck.yml@main | |
| if: github.event_name == 'pull_request' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| linter: | |
| name: Lint | |
| uses: pharmaverse/admiralci/.github/workflows/lintr.yml@main | |
| needs: get_r_version | |
| if: github.event_name == 'pull_request' | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| man-pages: | |
| name: Man Pages | |
| uses: pharmaverse/admiralci/.github/workflows/man-pages.yml@main | |
| if: github.event_name == 'pull_request' | |
| needs: get_r_version | |
| with: | |
| r-version: "${{ needs.get_r_version.outputs.r-version }}" | |
| tests: | |
| name: Tests | |
| runs-on: ubuntu-latest | |
| needs: get_r_version | |
| container: | |
| image: "ghcr.io/pharmaverse/admiralci-${{ needs.get_r_version.outputs.r-version }}:latest" | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| Rscript -e 'remotes::install_deps(dependencies = TRUE)' | |
| - name: Run tests | |
| shell: Rscript {0} | |
| run: | | |
| devtools::load_all(".") | |
| devtools::test() | |
| check: | |
| name: Check | |
| uses: pharmaverse/admiralci/.github/workflows/r-cmd-check.yml@main | |
| if: github.event_name == 'pull_request' | |
| with: | |
| error-on: error |