Merge pull request #4 from papaemmelab/refactor-main #58
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| name: nf-purple CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| test_pipeline: | |
| runs-on: ubuntu-latest | |
| name: Job to run the test workflow | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: nf-core/setup-nextflow@v1 | |
| - name: Install nf-test | |
| run: | | |
| wget -qO- https://code.askimed.com/install/nf-test | bash | |
| sudo mv nf-test /usr/local/bin/ | |
| - name: Pull Docker image and cache | |
| run: | | |
| docker pull papaemmelab/purple:v0.1.1 | |
| docker pull quay.io/biocontainers/hmftools-sage:3.4.4--hdfd78af_0 | |
| - name: Run unit tests for process module and main workflow | |
| run: | | |
| nf-test test --ci --coverage |