✅ Refactor each process as module, and fix matched/unmatched mode #57
Workflow file for this run
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name: nf-purple CI | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
test_pipeline: | |
runs-on: ubuntu-latest | |
name: Job to run the test workflow | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: nf-core/setup-nextflow@v1 | |
- name: Install nf-test | |
run: | | |
wget -qO- https://code.askimed.com/install/nf-test | bash | |
sudo mv nf-test /usr/local/bin/ | |
- name: Pull Docker image and cache | |
run: | | |
docker pull papaemmelab/purple:v0.1.1 | |
docker pull quay.io/biocontainers/hmftools-sage:3.4.4--hdfd78af_0 | |
- name: Run unit tests for process module and main workflow | |
run: | | |
nf-test test --ci --coverage |