🛠️ Modification to bin cobalt outputs and add purity forcing #35

	name: nf-purple CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	test_pipeline:
	runs-on: ubuntu-latest
	name: Job to run the test workflow
	steps:
	- uses: actions/checkout@v3
	- uses: nf-core/setup-nextflow@v1
	- name: Install nf-test
	run: \|
	wget -qO- https://code.askimed.com/install/nf-test \| bash
	sudo mv nf-test /usr/local/bin/
	- name: Pull Docker image and cache
	run: \|
	docker pull papaemmelab/purple:v0.1.0
	- name: Run unit tests of each process for Amber, Cobalt, Purple
	run: \|
	nf-test test tests/main.runamber.nf.test
	nf-test test tests/main.runcobalt.nf.test
	nf-test test tests/main.runpurple.nf.test
	- name: Run pipeline end-to-end test
	run: \|
	nf-test test tests/main.nf.test

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