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adding test to see where we are
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umarteauowkin committed Oct 17, 2023
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3 changes: 3 additions & 0 deletions pydeseq2/utils.py
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Expand Up @@ -517,6 +517,9 @@ def irls_solver(
"""

assert optimizer in ["BFGS", "L-BFGS-B"]
print("counts shape: ", counts.shape)
print("design_matrix shape: ", design_matrix.shape)
print("size_factors shape: ", size_factors.shape)

num_vars = design_matrix.shape[1]
X = design_matrix
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