initial commit

owkin · Oct 17, 2023 · 589d70e · 589d70e
1 parent 8fbcc2f
commit 589d70e
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/pydeseq2/ds.py b/pydeseq2/ds.py
@@ -146,6 +146,7 @@ class DeseqStats:
     def __init__(
         self,
         dds: DeseqDataSet,
+        test: Literal["Wald", "LRT"] = "Wald",
         contrast: Optional[List[str]] = None,
         alpha: float = 0.05,
         cooks_filter: bool = True,
@@ -167,6 +168,7 @@ def __init__(
         self.dds = dds
 
         self.alpha = alpha
+        self.test = test
         self.cooks_filter = cooks_filter
         self.independent_filter = independent_filter
         self.base_mean = self.dds.varm["_normed_means"].copy()