Repositories list

• CulturalCooperation

  Public
  Repo for: "Non-Vertical Cultural Transmission, Assortment, and the Evolution of Cooperation"

  Jupyter Notebook

  •0•2•1•1•Updated Nov 26, 2024Nov 26, 2024

• PrestigeBias

  Public
  Repo for: "Prestige bias in cultural evolutionary dynamics"

  Jupyter Notebook

  •0•0•0•1•Updated Jun 2, 2024Jun 2, 2024

• chuong_et_al

  Public
  Repo for: Chuong et al. (2024) DNA replication errors are a major source of adaptive gene amplification

  evolutionbayesian-inferenceyeast+ 3sbievolutionary-modelsexperimental-evolution

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• cnv_sims_inference

  Public
  Repo for: Avecilla et al (2022) Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics. PLOS Biology. doi:10.1371/journal.pbio.3001633

  evolutionbayesian-inferenceyeast+ 3evolutionary-modelssimulation-based-inferencechemostat

  HTML

  •

  MIT License

  •1•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• Heatrisomy

  Public
  Repo for: "Aneuploidy can be an evolutionary diversion on the path to adaptation"

  Jupyter Notebook

  •0•0•0•1•Updated Mar 3, 2024Mar 3, 2024

• Self-Replicating-Artificial-Neural-Networks

  Public
  Evolving self-replicating artificial neural networks in a WF model over multiple GPU machines

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jan 12, 2024Jan 12, 2024

• revision_phenotypic_mrate

  Public
  Fork of repo for Lobinska et al, Genetics 2023 (doi:10.1093/genetics/iyad111)

  Jupyter Notebook

  •1•0•0•0•Updated Jan 30, 2023Jan 30, 2023

• EffectiveNPI

  Public
  Repo for: Kohanovski, Obolski, Ram (2022) "Inferring the effective start dates of non-pharmaceutical interventions during COVID-19 outbreaks". IJID. doi:10.1016/j.ijid.2021.12.364

  bayesian-inferencecovid-19seir-model+ 1non-pharmaceutical-interventions

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Sep 14, 2022Sep 14, 2022

• DistributedComputing

  Public
  Python

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  MIT License

  •1•0•0•0•Updated Sep 7, 2021Sep 7, 2021

• ImmunePriming

  Public
  Jupyter Notebook

  •1•1•0•0•Updated Jul 19, 2020Jul 19, 2020

• ddeint

  Public
  Scipy-based Delay Differential Equation (DDE) solver

  Python

  •24•1•0•0•Updated Sep 27, 2019Sep 27, 2019

• lag-modeling

  Public
  Python

  •2•0•0•0•Updated Dec 21, 2017Dec 21, 2017