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    213 repositories

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•0•0•8•Updated Dec 4, 2024Dec 4, 2024

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •7•8•0•186•Updated Dec 4, 2024Dec 4, 2024

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •4•2•0•15•Updated Dec 3, 2024Dec 3, 2024

    • gen3sdk-python

      Public
      Gen3 SDK for Python
      gen3-lib
      Python
      •
      Apache License 2.0
      •23•12•3•20•Updated Dec 3, 2024Dec 3, 2024

    • dictionaryutils

      Public
      python wrapper and metaschema for datadictionary
      gen3
      Python
      •
      Apache License 2.0
      •7•4•4•10•Updated Dec 3, 2024Dec 3, 2024

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•1•0•3•Updated Dec 3, 2024Dec 3, 2024

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•5•Updated Dec 3, 2024Dec 3, 2024

    • data-simulator

      Public
      gen3
      Python
      •
      Apache License 2.0
      •6•5•0•26•Updated Dec 3, 2024Dec 3, 2024

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•169•Updated Dec 3, 2024Dec 3, 2024

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•15•6•9•Updated Dec 3, 2024Dec 3, 2024

    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      gen3
      JavaScript
      •
      Apache License 2.0
      •11•7•1•14•Updated Dec 3, 2024Dec 3, 2024

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •44•29•43•21•Updated Dec 3, 2024Dec 3, 2024

    • gen3-qa

      Public
      Integration Tests for Gen3
      JavaScript
      •
      Apache License 2.0
      •4•6•2•16•Updated Dec 3, 2024Dec 3, 2024

    • hatchery

      Public
      hacktoberfestgen3
      Go
      •
      Apache License 2.0
      •4•7•0•10•Updated Dec 3, 2024Dec 3, 2024

    • gtex-dictionary

      Public
      Data dictionary to collect GTEx dataset
      gen3-data-dictionary
      Python
      •
      Apache License 2.0
      •2•2•0•4•Updated Dec 3, 2024Dec 3, 2024

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•3•72•Updated Dec 3, 2024Dec 3, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •138•0•0•7•Updated Dec 3, 2024Dec 3, 2024

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.4k•1•0•40•Updated Dec 3, 2024Dec 3, 2024

    • requestor

      Public
      API to manage access requests
      gen3
      Python
      •
      Apache License 2.0
      •0•4•0•3•Updated Dec 2, 2024Dec 2, 2024

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •10•15•1•7•Updated Dec 2, 2024Dec 2, 2024

    • gen3.org

      Public
      The website for gen3.org
      gen3
      HTML
      •
      Apache License 2.0
      •12•12•0•14•Updated Dec 2, 2024Dec 2, 2024

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •67•41•99•80•Updated Dec 2, 2024Dec 2, 2024

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•24•Updated Dec 2, 2024Dec 2, 2024

    • gen3-discovery-ai

      Public
      Gen3 Discovery AI
      Python
      •
      Apache License 2.0
      •0•1•0•14•Updated Dec 2, 2024Dec 2, 2024

    • canine-data-commons

      Public
      Gen3.2 web portal for caninedc.org
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•2•Updated Dec 1, 2024Dec 1, 2024

    • BMH-admin-portal

      Public
      Shared Codebase for the Biomedical Research Hub Initiative
      Python
      •
      Apache License 2.0
      •2•0•0•8•Updated Dec 1, 2024Dec 1, 2024

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•78•Updated Nov 30, 2024Nov 30, 2024

    • jupyter-superslim

      Public
      Super slim jupyter base image.
      Shell
      •
      Apache License 2.0
      •1•0•0•4•Updated Nov 28, 2024Nov 28, 2024

    • cdis-python-utils

      Public
      utilities to ease python code development
      gen3-lib
      Python
      •
      Apache License 2.0
      •2•1•0•3•Updated Nov 27, 2024Nov 27, 2024

    • .github

      Public template
      For default health files
      Apache License 2.0
      •2•0•0•9•Updated Nov 26, 2024Nov 26, 2024