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    70 repositories

    • nf-quilt

      Public
      Groovy
      •
      GNU General Public License v3.0
      •1•9•14•5•Updated Dec 15, 2024Dec 15, 2024

    • quiltcore-java

      Public
      Java implementation of the Quilt API
      Java
      •
      Apache License 2.0
      •1•0•3•7•Updated Dec 14, 2024Dec 14, 2024

    • iac

      Public
      Infrastructure as code for Quilt deployments
      HCL
      •0•4•1•0•Updated Dec 13, 2024Dec 13, 2024

    • quilt

      Public
      Quilt is a data mesh for connecting people with actionable data
      pythonserializationdatadata-engineeringparquetdata-version-controldata-versioning
      TypeScript
      •
      Apache License 2.0
      •90•1.3k•20•47•Updated Dec 13, 2024Dec 13, 2024

    • omics-quilt-demo

      Public
      Use CDK to create Quilt packages from AWS HealthOmics
      TypeScript
      •
      Apache License 2.0
      •0•0•4•3•Updated Dec 9, 2024Dec 9, 2024

    • fetchngs

      Public
      Pipeline to fetch metadata and raw FastQ files from public and private databases
      Nextflow
      •
      MIT License
      •73•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • gh-actions

      Public
      GH actions and reusable workflows to avoid duplications
      Shell
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • quiltcore

      Public
      Python
      •
      Apache License 2.0
      •0•1•6•13•Updated Nov 7, 2024Nov 7, 2024

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •712•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • kivy-sdk-packager

      Public
      Scripts for Kivy SDK generation on Windows, OS X and Linux
      Python
      •
      MIT License
      •32•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • plugins

      Public
      Nextflow plugins index repository
      23•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • quiltplus

      Public
      Resource-oriented Python API for Quilt's decentralized social knowledge platform
      pythonversioningdatasetresource-oriented-architecture
      Python
      •
      MIT License
      •0•1•3•12•Updated Oct 23, 2024Oct 23, 2024

    • benchling-packager

      Public
      Example of Benchling integration
      Python
      •
      Apache License 2.0
      •0•4•3•10•Updated Sep 26, 2024Sep 26, 2024

    • athena-federation-python-sdk

      Public
      Unofficial Python SDK for Athena Federation
      Python
      •
      Apache License 2.0
      •12•0•0•1•Updated Aug 29, 2024Aug 29, 2024

    • packaging-server

      Public
      Public Docker Container providing a REST API for creating Quilt packages in your own private cloud
      Rust
      •
      Apache License 2.0
      •0•0•2•1•Updated Aug 25, 2024Aug 25, 2024

    • nf-prov

      Public
      Groovy
      •
      Apache License 2.0
      •12•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • quilt-package-metadata-athena

      Public
      A comprehensive tutorial outlining
      metadatasqlathenas3quilt-packagesquilt3quilt-data
      Jupyter Notebook
      •0•5•0•1•Updated Aug 12, 2024Aug 12, 2024

    • unitycatalog

      Public
      Open, Multi-modal Catalog for Data & AI
      Java
      •
      Apache License 2.0
      •405•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • nf-prov-quilt

      Public
      Fork of nf-prov with a Quilt format
      Groovy
      •
      Apache License 2.0
      •12•0•0•1•Updated Jun 20, 2024Jun 20, 2024

    • pydoc-markdown

      Public
      Create Python API documentation in Markdown format.
      Python
      •
      MIT License
      •105•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • examples

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •5•12•4•0•Updated Mar 9, 2024Mar 9, 2024

    • multicodec

      Public
      Compact self-describing codecs. Save space by using predefined multicodec tables.
      Python
      •
      MIT License
      •206•0•0•0•Updated Feb 22, 2024Feb 22, 2024

    • lambda

      Public
      Build Lambda deployment packages faster with Docker
      Dockerfile
      •
      Apache License 2.0
      •10•24•2•1•Updated Jan 25, 2024Jan 25, 2024

    • kivymd_reload_async

      Public
      Demo KivyMD Python GUI app with hot reload and trio async
      Python
      •
      MIT License
      •0•0•0•4•Updated Dec 16, 2023Dec 16, 2023

    • instance-scheduler-on-aws

      Public
      A cross-account and cross-region solution that allows customers to automatically start and stop EC2 and RDS Instances
      Python
      •
      Apache License 2.0
      •282•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • aws-healthomics-eventbridge-integration

      Public
      Python
      •
      MIT No Attribution
      •4•0•0•0•Updated Nov 4, 2023Nov 4, 2023

    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      •
      Apache License 2.0
      •638•0•0•0•Updated Oct 25, 2023Oct 25, 2023

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5k•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • pytorch-examples

      Public
      A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9.6k•7•0•0•Updated Oct 4, 2023Oct 4, 2023

    • quiltcore-java-test

      Public
      Groovy
      •0•0•0•0•Updated Sep 18, 2023Sep 18, 2023