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    16 repositories

    • biobakerymgx

      Public
      Read-preprocessing, taxonomic classification, functional classification, strain analysis, and pangenome analysis using bioBakery tools
      Nextflow
      •
      MIT License
      •7•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • MicrobiomeDB

      Public
      An R package containing tools for analyzing and visualizing microbiome data
      R
      •
      Apache License 2.0
      •0•3•15•1•Updated Sep 30, 2024Sep 30, 2024

    • shotgun_metagenomics

      Public
      A collection of shotgun metagenomics data sets intended for use with the mbio-airflow-dags repository
      HTML
      •0•0•1•0•Updated Sep 27, 2024Sep 27, 2024

    • mbio_airflow_dags

      Public
      A collection of DAGs for running MicrobiomeDB data pipelines using Apache Airflow
      Python
      •
      Apache License 2.0
      •1•1•4•1•Updated Sep 27, 2024Sep 27, 2024

    • veupathUtils

      Public
      R
      •
      Apache License 2.0
      •0•0•9•0•Updated Sep 20, 2024Sep 20, 2024

    • mbio_paper_analysis

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • amplicon_sequencing

      Public
      A collection of amplicon sequencing data sets intended for use with the mbio-airflow-dags repository
      HTML
      •0•0•1•0•Updated Jun 19, 2024Jun 19, 2024

    • microbiomeData

      Public
      An R package containing all of the curated datasets from MicrobiomeDB.org
      R
      •
      Apache License 2.0
      •0•0•9•0•Updated Jun 10, 2024Jun 10, 2024

    • microbiomeComputations

      Public
      An R package for analyzing microbiome data
      R
      •
      Apache License 2.0
      •0•0•16•0•Updated Jun 5, 2024Jun 5, 2024

    • corGraph

      Public
      An R Shiny app to generate correlation matrices and visualize them as networks
      R
      •
      Apache License 2.0
      •1•0•17•0•Updated May 30, 2024May 30, 2024

    • R-local-dev

      Public
      R
      •0•0•0•0•Updated May 29, 2024May 29, 2024

    • MicrobiomeDB-nextflow

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 24, 2024May 24, 2024

    • marker-gene-analysis-16s-DADA2-nextflow

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated May 24, 2024May 24, 2024

    • corral-nextflow

      Public
      Nextflow
      •
      MIT License
      •0•0•1•0•Updated May 24, 2024May 24, 2024

    • humann-nextflow

      Public
      Nextflow
      •0•0•0•0•Updated May 24, 2024May 24, 2024

    • airflow-nf-core-template

      Public template
      A dockerfile intended for launching nf-core pipelines via apache airflow
      Shell
      •0•0•0•0•Updated May 7, 2024May 7, 2024