Repositories list

• cbioportal

  Public
  cBioPortal for Cancer Genomics

  visualizationscienceprecision-medicine+ 1cancer-genomics

  Java

  •

  GNU Affero General Public License v3.0

  •534•667•293•28•Updated Dec 3, 2024Dec 3, 2024

• cbioportal-frontend

  Public
  React Frontend of cBioPortal 🎉

  reactmobxcancer-genomics

  TypeScript

  •

  GNU Affero General Public License v3.0

  •288•110•0•48•Updated Dec 3, 2024Dec 3, 2024

• oncotree

  Public
  Java

  •

  Creative Commons Attribution 4.0 International

  •27•37•29•4•Updated Dec 2, 2024Dec 2, 2024

• datahub

  Public
  A centralized location for storing curated data from cBioPortal

  HTML

  •120•175•124•16•Updated Nov 30, 2024Nov 30, 2024

• cbioportal-core

  Public
  Externalized cBioPortal Core

  Java

  •15•2•14•7•Updated Nov 27, 2024Nov 27, 2024

• datahub-study-curation-tools

  Public
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  HTML

  •

  GNU Affero General Public License v3.0

  •14•18•3•2•Updated Nov 26, 2024Nov 26, 2024

• cbioportal-helm

  Public
  Helm charts for cBioPortal Kubernetes Deployment

  1•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• cbioportal-test

  Public
  Tests for cBioPortal.

  Shell

  •

  MIT License

  •1•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• kc-user-importer

  Public
  Keycloak Legacy Light Client and user import scripts

  Python

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• cbioportal-docker-compose

  Public
  Run cBioPortal using Docker Compose

  Shell

  •34•14•0•1•Updated Nov 19, 2024Nov 19, 2024

• GSoC

  Public
  Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

  43•113•25•0•Updated Sep 23, 2024Sep 23, 2024

• cbiohubpy

  Public
  Python package providing convenience functions for analyzing cBioPortal data files

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• cbio-jupyter

  Public
  JavaScript

  •1•0•0•0•Updated Aug 23, 2024Aug 23, 2024

• clinical-data-dictionary

  Public
  Clinical Attribute Web Service for retrieving clinical attribute names and metadata.

  Java

  •7•5•4•3•Updated Aug 2, 2024Aug 2, 2024

• codebook

  Public
  A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes

  Jupyter Notebook

  •13•9•2•0•Updated May 24, 2024May 24, 2024

• rfc80-team

  Public
  repository to hold issues for the rfc80 development / deployment team

  0•0•14•0•Updated May 8, 2024May 8, 2024

• .github

  Public
  README for cBioPortal Org Page

  1•0•0•1•Updated Mar 7, 2024Mar 7, 2024

• maf

  Public
  Utility classes for the Mutation Annotation Format (MAF)

  Java

  •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

• cancerhotspots

  Public
  Cancer Hotspots

  JavaScript

  •

  GNU Affero General Public License v3.0

  •9•5•4•2•Updated Feb 7, 2024Feb 7, 2024

• MobxPromise

  Public
  Provides an observable interface for a computed promise.

  TypeScript

  •

  MIT License

  •5•3•0•1•Updated Jan 22, 2024Jan 22, 2024

• cache_warmer

  Public
  JavaScript

  •1•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• installation-map

  Public
  cBioPortal Installation Map

  TypeScript

  •4•0•0•0•Updated Sep 14, 2023Sep 14, 2023

• cbioportal-backend

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• session-service

  Public
  Java

  •16•6•13•1•Updated Jul 14, 2023Jul 14, 2023

• cbioportal-clickhouse-pilot

  Public
  Python

  •4•0•0•0•Updated May 10, 2023May 10, 2023

• svg2pdf.js

  Public
  A javascript-only SVG to PDF conversion utility that runs in the browser leveraging jsPDF.

  HTML

  •

  MIT License

  •104•0•0•0•Updated Apr 26, 2023Apr 26, 2023

• cbioportal-frontend-archive-1

  Public
  Archived version of cbioportal-frontend before rewriting history to remove large objects

  TypeScript

  •

  GNU Affero General Public License v3.0

  •1•0•0•1•Updated Apr 24, 2023Apr 24, 2023

• gdc-et-pipeline

  Public
  GSoC : Spring-batch based system to extract and transform GDC hosted data to suitable cBioPortal file formats.

  Java

  •

  GNU Affero General Public License v3.0

  •4•0•9•4•Updated Nov 16, 2022Nov 16, 2022

• documentation

  Public archive
  CSS

  •1•0•1•1•Updated Jun 23, 2022Jun 23, 2022

• oncoprintjs

  Public archive
  OncoPrint visualization

  TypeScript

  •

  GNU Lesser General Public License v3.0

  •16•23•6•5•Updated Jun 8, 2022Jun 8, 2022