The Australian e-Health Research Centre

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141 repositories

pathling
Public
Tools that make it easier to use FHIR® and clinical terminology within data analytics, built on Apache Spark.
spark analytics standards fhir terminology
Java
•
Apache License 2.0
•12•92•54•115•Updated Dec 24, 2024Dec 24, 2024
smart-forms
Public
React-based form renderer implementing Structured Data Capture (SDC) FHIR specification
react typescript fhir structured-data-capture
TypeScript
•
Apache License 2.0
•16•37•19•11•Updated Dec 23, 2024Dec 23, 2024
cxrmate-ed
Public
Jupyter Notebook
•
Apache License 2.0
•0•1•0•0•Updated Dec 20, 2024Dec 20, 2024
snowstorm-java-client
Public
Java client for Snowstorm
Apache License 2.0
•0•0•0•3•Updated Dec 20, 2024Dec 20, 2024
sql-on-fhir-evaluation
Public
Replication of a MIMIC-IV-based study in support of the SQL on FHIR paper.
HTML
•
Apache License 2.0
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
SMART-EHR-Launcher
Public
An EHR simulator dashboard testing tool to launch SMART on FHIR apps
react typescript fhir ehr
TypeScript
•
Apache License 2.0
•0•2•0•0•Updated Dec 19, 2024Dec 19, 2024
ontoserver-deploy
Public
Sample deployment project for Ontoserver
HCL
•
Apache License 2.0
•7•19•0•1•Updated Dec 13, 2024Dec 13, 2024
snowstorm-perf
Public
A temporary fork of Snowstorm to improve search performance for ECL member of queries
Java
•
Other
•87•0•0•0•Updated Dec 11, 2024Dec 11, 2024
radgraph
Public
Python
•
Apache License 2.0
•1•0•1•0•Updated Dec 3, 2024Dec 3, 2024
smart-forms-ig
Public
GLSL
•
Other
•0•4•0•2•Updated Nov 29, 2024Nov 29, 2024
onto-web-test
Public
HTML
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
parquet-on-fhir
Public
A specification for representing FHIR data within the Apache Parquet format.
Creative Commons Zero v1.0 Universal
•0•6•0•0•Updated Nov 15, 2024Nov 15, 2024
terraform-aws-serverless-beacon
Public
Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information
serverless terraform beacon
Python
•
Other
•5•9•0•0•Updated Oct 24, 2024Oct 24, 2024
aehrc-helm
Public
Shell
•0•0•0•0•Updated Oct 23, 2024Oct 23, 2024
real-time-fhir
Public
A simulated FHIR data source that can write resources into a remote FHIR server in real time.
JavaScript
•
Other
•1•3•0•0•Updated Oct 23, 2024Oct 23, 2024
VariantSpark
Public
machine learning for genomic variants
emr aws bioinformatics association-studies variantspark gwas genome random-forest notebook vcf
JavaScript
•
Other
•45•142•22•10•Updated Oct 17, 2024Oct 17, 2024
AskBeacon
Public
Jupyter Notebook
•0•0•0•0•Updated Oct 17, 2024Oct 17, 2024
helm-charts
Public
Smarty
•4•0•0•0•Updated Oct 16, 2024Oct 16, 2024
imageclefmedical_caption_23
Public
MedICap: Code for the participation of team CSIRO at the ImageCLEFmedical Caption task of 2023.
medical-imaging image-captioning multimodal-learning multimodal report-generation medical-image-captioning
Jupyter Notebook
•
Apache License 2.0
•0•2•3•0•Updated Oct 16, 2024Oct 16, 2024
sVEP
Public
Perl
•2•4•0•0•Updated Oct 9, 2024Oct 9, 2024
fhir-tx-transforms
Public
Transformations of various code systems to FHIR.
Java
•
Other
•6•4•0•4•Updated Oct 3, 2024Oct 3, 2024
BitEpi
Public
C++
•
Other
•3•8•1•1•Updated Oct 2, 2024Oct 2, 2024
labcodeset-fhir-transform
Public
Application which transforms Nederlandse Labcodeset from its native XML file format to a collection of FHIR terminology resources.
fhir snomed loinc terminology ucum labcodeset
Java
•
Other
•2•3•0•0•Updated Sep 30, 2024Sep 30, 2024
ecl-builder
Public
UI components that help you build SNOMED CT ECL expressions.
JavaScript
•
Apache License 2.0
•0•1•6•0•Updated Sep 30, 2024Sep 30, 2024
cxrmate
Public
CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation
medical-imaging image-captioning chest-xray-images multimodal-learning radiology-reports chest-x-ray-report-generation
Python
•
Apache License 2.0
•3•14•13•0•Updated Sep 25, 2024Sep 25, 2024
org.hl7.fhir.core
Public
Java
•
Apache License 2.0
•165•1•0•1•Updated Sep 24, 2024Sep 24, 2024
logical-model-web
Public
Batchfile
•0•0•0•0•Updated Sep 22, 2024Sep 22, 2024
genomator
Public
Privacy-hardened, hallucination-resistant synthetic data generator.
Python
•
BSD 3-Clause Clear License
•0•1•0•0•Updated Sep 20, 2024Sep 20, 2024
ForensicSexEstimation
Public
A deep learning framework for forensic sex estimation from 3D CT
Python
•
Apache License 2.0
•0•0•0•0•Updated Sep 4, 2024Sep 4, 2024
smart-launcher-v2
Public
SMART Launcher
TypeScript
•
Apache License 2.0
•19•1•0•0•Updated Sep 4, 2024Sep 4, 2024