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    28 repositories

    • psilbhb

      Public
      Python
      •
      MIT License
      •0•0•4•0•Updated Jan 7, 2025Jan 7, 2025

    • psiaudio

      Public
      sound factories for psiexperiment / psilbhb
      Python
      •
      MIT License
      •2•0•0•0•Updated Jan 7, 2025Jan 7, 2025

    • NEMS

      Public
      The Neural Encoding Model System (NEMS) provides tools to fit and evaluate models of sensory encoding and decoding.
      Python
      •
      GNU General Public License v3.0
      •1•7•14•0•Updated Nov 27, 2024Nov 27, 2024

    • laminar_tools

      Public
      small number of tools for LFP based depth analysis
      Python
      •0•1•0•0•Updated Mar 15, 2024Mar 15, 2024

    • context_probe_analysis

      Public
      Code used for analysis in Lopez Espejo and David 2019.
      Jupyter Notebook
      •
      Other
      •1•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • NEMS0

      Public
      THIS VERSION OF NEMS IS NO LONGER SUPPORTED. PLEASE USE THE NEW NEMS REPOSITORY OR INSTALL NEMS_DB TO GET NEMS0 SUPPORT.
      Python
      •
      GNU General Public License v3.0
      •4•8•21•1•Updated Apr 4, 2023Apr 4, 2023

    • nems-lite

      Public
      Neural encoding model system core components
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 26, 2022Aug 26, 2022

    • psiexperiment

      Public
      Auditory experiment framework with a focus on rapid experiment design
      Python
      •
      MIT License
      •5•0•0•0•Updated Jul 14, 2022Jul 14, 2022

    • ferret-lick-spout

      Public
      Ferret lick spout
      OpenSCAD
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Apr 25, 2022Apr 25, 2022

    • multichannel_sorting

      Public
      MATLAB
      •2•0•2•0•Updated Mar 7, 2022Mar 7, 2022

    • BaphyKiloSort

      Public
      Code to start KiloSort sorting jobs with Baphy data, and to import the results after
      MATLAB
      •0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

    • 3d-calibration-parts

      Public
      OpenSCAD
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jan 12, 2022Jan 12, 2022

    • KiloSort

      Public
      GPU code for spike sorting
      MATLAB
      •
      GNU General Public License v2.0
      •100•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • phy-plugins

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • phy

      Public
      Spike sorting, analysis, and visualization of ephys data in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •162•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • Kilosort2

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •252•0•0•0•Updated Nov 15, 2021Nov 15, 2021

    • npy-matlab

      Public
      Experimental code to read/write NumPy .NPY files in MATLAB
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •213•0•0•0•Updated Nov 4, 2021Nov 4, 2021

    • phylib

      Public
      Lightweight electrophysiological data analysis library
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•0•0•0•Updated Jun 1, 2021Jun 1, 2021

    • R01_svd

      Public
      Python
      •1•0•0•0•Updated May 28, 2021May 28, 2021

    • sortingQuality

      Public
      Functions to assess quality of spike sorting results
      MATLAB
      •
      GNU General Public License v3.0
      •23•0•0•0•Updated Nov 11, 2020Nov 11, 2020

    • TORC-Generator

      Public
      Code to generate temporally orthogonal ripple combinations (TORCs)
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated May 7, 2020May 7, 2020

    • phy-contrib

      Public
      Plugins for phy
      Python
      •39•2•0•0•Updated Mar 29, 2020Mar 29, 2020

    • python_neurobootcamp

      Public
      Jupyter Notebook
      •
      MIT License
      •12•0•0•0•Updated Sep 16, 2019Sep 16, 2019

    • nems_web-PRE-4-28-2018

      Public
      Web-based UI for NEMS package
      Python
      •0•1•2•0•Updated Apr 29, 2018Apr 29, 2018

    • nems_baphy

      Public
      The API interface that NEMS uses to access BAPHY data
      Python
      •0•0•0•0•Updated Apr 6, 2018Apr 6, 2018

    • NEMS_PRE2018-03-09

      Public
      NEMS helps you create & fit mathematical models to time series data
      Python
      •0•1•0•0•Updated Mar 9, 2018Mar 9, 2018

    • labhub

      Public
      OHSU Open Science Workshop on tools and methods for building transparency within a lab
      Shell
      •16•0•0•0•Updated Dec 8, 2017Dec 8, 2017

    • celldb

      Public
      Automatically exported from code.google.com/p/celldb
      PHP
      •0•1•0•0•Updated Nov 3, 2015Nov 3, 2015