Repositories list

• ANNEXA

  Public
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).

  Python

  •3•7•0•0•Updated Dec 20, 2024Dec 20, 2024

• Resist_Portal

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• .github

  Public
  IGDR Long Read (LR) github organization

  0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

• EnrichRadar

  Public
  DESeq2 output viewer + make interactive filters

  R

  •0•2•0•0•Updated Jul 10, 2024Jul 10, 2024

• TransforKmers

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Apr 29, 2024Apr 29, 2024

• ANNEXseq

  Public
  Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

  annotation-toollncrnananopore-sequencing+ 1long-read-sequencing

  Nextflow

  •

  MIT License

  •0•2•2•0•Updated Nov 15, 2023Nov 15, 2023

• BamType

  Public
  Quality control of newly discovered transcript annotation

  HTML

  •

  MIT License

  •0•2•0•0•Updated Jun 30, 2023Jun 30, 2023