Generic Model Organism Database Project

All

100 repositories

indexedfasta-js
Public
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
TypeScript
•
MIT License
•4•12•1•1•Updated Dec 5, 2024Dec 5, 2024
Apollo3
Public
JBrowse 2 plugin for editing annotations on an Apollo server
TypeScript
•
Apache License 2.0
•4•7•57•13•Updated Dec 4, 2024Dec 4, 2024
jbrowse-components
Public
Source code for JBrowse 2, a modern React-based genome browser
visualization bioinformatics genomics jbrowse
TypeScript
•
Apache License 2.0
•63•211•302•22•Updated Dec 4, 2024Dec 4, 2024
bgzf-filehandle
Public
Nodejs filehandle for reading bgzip+.gzi compressed files
TypeScript
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MIT License
•4•7•4•3•Updated Dec 1, 2024Dec 1, 2024
generic-filehandle
Public
use a subset of the NodeJS promise-based file handle API to access both local and remote files
TypeScript
•6•4•4•7•Updated Dec 1, 2024Dec 1, 2024
vcf-js
Public
High performance Variant Call Format (VCF) parser in pure JavaScript
TypeScript
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MIT License
•5•23•3•4•Updated Nov 30, 2024Nov 30, 2024
tabix-js
Public
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
TypeScript
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MIT License
•5•14•2•0•Updated Nov 30, 2024Nov 30, 2024
react-msaview
Public
A multiple sequence alignment viewer
TypeScript
•
MIT License
•1•18•22•0•Updated Nov 27, 2024Nov 27, 2024
jbrowse-react-app-vite-demo
Public
TypeScript
•0•0•0•0•Updated Nov 24, 2024Nov 24, 2024
jbrowse-react-linear-genome-view-vite-demo
Public
TypeScript
•1•0•0•0•Updated Nov 24, 2024Nov 24, 2024
bbi-js
Public
Parser for bigwig and bigbed files
TypeScript
•
MIT License
•6•8•8•0•Updated Nov 21, 2024Nov 21, 2024
nclist-js
Public
Read JBrowse v1 nested containment list feature stores from modern JS
TypeScript
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MIT License
•0•0•0•3•Updated Nov 19, 2024Nov 19, 2024
abortable-promise-cache
Public
add AbortController support to a cache of async requests
TypeScript
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MIT License
•2•6•1•4•Updated Nov 19, 2024Nov 19, 2024
jbrowse-react-linear-genome-view-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-linear-genome-view-farm-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-linear-genome-view-nextjs-demo
Public
TypeScript
•1•1•1•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-linear-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-circular-genome-view-nextjs-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-circular-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-app-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-app-farm-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-app-nextjs-demo
Public
TypeScript
•0•1•1•0•Updated Nov 18, 2024Nov 18, 2024
jbrowse-react-app-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 18, 2024Nov 18, 2024
cram-js
Public
Read CRAM v3 and v2 in node or in the browser
genomics
TypeScript
•
MIT License
•9•18•7•2•Updated Nov 17, 2024Nov 17, 2024
twobit-js
Public
Read .2bit files with pure JS. Works in node or webpack.
TypeScript
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MIT License
•2•4•0•2•Updated Nov 15, 2024Nov 15, 2024
gmod.github.io
Public
GMOD Website, derived from gmod.github.io
HTML
•1•0•0•0•Updated Nov 12, 2024Nov 12, 2024
bam-js
Public
Parse BAM and BAM index files in javascript for node and the browser
TypeScript
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MIT License
•9•21•10•1•Updated Nov 12, 2024Nov 12, 2024
jbrowse-plugin-protein3d
Public
3D protein structure visualizer in jbrowse 2 - WIP
TypeScript
•0•0•1•1•Updated Nov 4, 2024Nov 4, 2024
ixixx-js
Public
TypeScript
•
MIT License
•2•3•1•0•Updated Sep 19, 2024Sep 19, 2024
gff-js
Public
parse and format streams of GFF3, for node or webpack
genomics
TypeScript
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MIT License
•6•11•1•2•Updated Sep 12, 2024Sep 12, 2024