Repositories list

• website

  Public
  This is a website replacement project for Cancer Genome Collaboratory

  JavaScript

  •

  MIT License

  •0•0•3•0•Updated Mar 25, 2024Mar 25, 2024

• dockstore-tool-bamstats

  Public archive
  A repo for the BAMStats command, used as the tutorial for Dockstore

  dockerdockstorebamstats

  Common Workflow Language

  •

  Apache License 2.0

  •72•8•0•0•Updated Aug 16, 2022Aug 16, 2022

• dockstore-tool-samtools-view

  Public
  Adapted from https://github.com/common-workflow-language/workflows

  3•0•0•0•Updated Jun 1, 2020Jun 1, 2020

• dockstore-tool-liftover

  Public
  From https://github.com/common-workflow-language/workflows

  1•0•0•0•Updated Feb 21, 2020Feb 21, 2020

• infrastructure

  Public
  Public repository for Collaboratory Infrastructure

  Shell

  •

  GNU General Public License v3.0

  •3•7•0•0•Updated Oct 16, 2018Oct 16, 2018

• dockstore-tool-bedgraph-bigwig

  Public
  From https://github.com/common-workflow-language/workflows

  2•0•0•0•Updated Apr 6, 2018Apr 6, 2018

• dockstore-tool-snpeff

  Public
  Example tool at dockstore.org

  Common Workflow Language

  •0•0•0•0•Updated Apr 6, 2018Apr 6, 2018

• k8s-on-openstack

  Public
  An opinionated way to deploy a Kubernetes cluster on top of an OpenStack cloud.

  Shell

  •

  Apache License 2.0

  •48•0•0•0•Updated Sep 25, 2017Sep 25, 2017

• webstatus-update

  Public
  Provide status updates to the web site by uploading a JSON file over scp.

  Python

  •0•0•0•0•Updated Jun 6, 2017Jun 6, 2017

• dockstore-tool-kallisto

  Public
  Example tool at dockstore.org

  Shell

  •0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-rnaseqc

  Public
  Example tool at dockstore.org

  Shell

  •0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-samtools-rmdup

  Public
  Adapted from https://github.com/common-workflow-language/workflows

  0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-samtools-sort

  Public
  Adapted from https://github.com/common-workflow-language/workflows

  1•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-bwa-samse

  Public
  From https://github.com/common-workflow-language/workflows

  0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-bwa-aln

  Public
  Adapted from https://github.com/common-workflow-language/workflows

  0•0•0•0•Updated Sep 15, 2016Sep 15, 2016

• dockstore-tool-bedtools-genomecov

  Public
  From https://github.com/common-workflow-language/workflows

  0•0•0•0•Updated Sep 14, 2016Sep 14, 2016

• dockstore-tool-bwa-mem

  Public
  From https://github.com/common-workflow-language/workflows

  2•0•0•0•Updated Sep 14, 2016Sep 14, 2016

• dockstore-tool-samtools-index

  Public
  From https://github.com/common-workflow-language/workflows

  0•0•0•0•Updated Sep 14, 2016Sep 14, 2016

• dockstore-tool-linux-sort

  Public
  From https://github.com/common-workflow-language/workflows

  1•0•0•0•Updated Sep 14, 2016Sep 14, 2016

• dockstore-tool-ubu-sam-filter

  Public
  Example tool at dockstore.org

  0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

• dockstore-tool-ubu-sam-summary

  Public
  Example tool at dockstore.org

  0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

• dockstore-tool-ubu-sam-diff

  Public
  Example tool at dockstore.org

  0•0•0•0•Updated Aug 11, 2016Aug 11, 2016

• dockstore-whalesay

  Public
  An example repo for dockstore sample workflows

  Apache License 2.0

  •4•0•0•0•Updated Apr 4, 2016Apr 4, 2016

• quiddity-schemas

  Public
  Schemas for development

  0•0•0•0•Updated Mar 28, 2016Mar 28, 2016

• manifest-to-consonance

  Public
  A tool that converts from a DCC Portal manifest file to a workflow order in the Consonance system.

  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 10, 2015Nov 10, 2015

• cli

  Public
  Shell

  •0•1•0•0•Updated Oct 9, 2015Oct 9, 2015

• ceph

  Public
  Ceph related info.

  Python

  •0•0•0•0•Updated Mar 27, 2015Mar 27, 2015