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feat: dropped unused test
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Szymon Szyszkowski committed Jul 31, 2024
1 parent c442061 commit bd1e70a
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Expand Up @@ -53,16 +53,3 @@ build-genetics-etl-image: build-whl ## build local genetics-etl image for the te
--tag genetics_etl:test \
-f images/genetics_etl/Dockerfile \
--build-arg DIST=$(shell find dist -name 'ot_orchestration*')

test-gwas-catalog-batch-script: ## test harmonisation task
mkdir -p test_batch
gsutil -m rsync -r gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600 test_batch
docker run \
-v $(HOME)/.config/gcloud:/root/.config/gcloud \
-e MANIFEST_PATH=gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600/manifest.json \
-e GOOGLE_APPLICATION_CREDENTIALS=/root/.config/gcloud/service_account_credentials.json \
-ti \
--rm \
genetics_etl:test \
-c "ot gwas-catalog-process-in-batch"
gsutil -m rsync -r test_batch gs://ot_orchestration/tests/gwas_catalog/basic_test/GCST004600

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