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8 changes: 4 additions & 4 deletions projects/Albany_DAES.yaml
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Description: Department of Atmospheric and Environmental Sciences at the University of Albany.
Department: Department of Atmospheric Environmental Sciences
Description: Department of Atmospheric and Environmental Sciences at the University
of Albany.
FieldOfScience: Atmospheric Sciences
InstitutionID: 'https://osg-htc.org/iid/m9adt6gcsr8c'
Organization: University of Albany
PIName: Ryan Torn


PIName: Ryan Torn
Sponsor:
CampusGrid:
Name: OSG Connect
1 change: 1 addition & 0 deletions projects/Argoneut.yaml
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Expand Up @@ -2,6 +2,7 @@ Department: N/A
Description: Project entry corresponding to the Argoneut VO.
FieldOfScience: High Energy Physics
ID: '501'
InstitutionID: 'https://osg-htc.org/iid/ik4s3ql8u1j7'
Organization: Fermilab
PIName: Joe Boyd
Sponsor:
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6 changes: 4 additions & 2 deletions projects/Arkansas_Nelson.yaml
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Description: Statistical analysis on keys generated by a lattice based cryptography algorithm for post-quantum cryptography to determine patterns in the types of errors produced in the keys.
Department: Computer Science & Computer Engineering
Description: Statistical analysis on keys generated by a lattice based cryptography
algorithm for post-quantum cryptography to determine patterns in the types of errors
produced in the keys.
FieldOfScience: Computer Science
InstitutionID: 'https://osg-htc.org/iid/78b3lgmajszi'
Organization: University of Arkansas
PIName: Alexander Nelson

Sponsor:
CampusGrid:
Name: OSG Connect
4 changes: 2 additions & 2 deletions projects/Arkansas_UITSStaff.yaml
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@@ -1,9 +1,9 @@
Description: Research computing staff at University of Arkansas https://directory.uark.edu/departmental/uits/university-information-technology-serv
Department: Information Technology
Description: Research computing staff at University of Arkansas https://directory.uark.edu/departmental/uits/university-information-technology-serv
FieldOfScience: Research Computing
InstitutionID: 'https://osg-htc.org/iid/78b3lgmajszi'
Organization: University of Arkansas
PIName: Don DuRousseau

Sponsor:
CampusGrid:
Name: OSG Connect
7 changes: 4 additions & 3 deletions projects/BYUI_Becerril.yaml
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@@ -1,9 +1,10 @@
Description: Training undergraduate students in scientific computing through teaching elective courses
Department: Chemistry Department
Description: Training undergraduate students in scientific computing through teaching
elective courses
FieldOfScience: Chemistry
InstitutionID: 'https://osg-htc.org/iid/vgfpbpee9lqo'
Organization: Brigham Young University Idaho
PIName: Héctor A. Becerril

PIName: Héctor A. Becerril
Sponsor:
CampusGrid:
Name: OSG Connect
1 change: 1 addition & 0 deletions projects/BioAlgorithms.yaml
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Expand Up @@ -2,6 +2,7 @@ Department: Computer Science
Description: Algorithmic development for Bioinformatics
FieldOfScience: Bioinformatics
ID: '414'
InstitutionID: 'https://osg-htc.org/iid/q9k1b8dfrw25'
Organization: University of Nebraska-Lincoln
PIName: Natasha Pavlovikj
Sponsor:
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1 change: 1 addition & 0 deletions projects/Biomim.yaml
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Expand Up @@ -5,6 +5,7 @@ Description: The project involves studies of substrate binding, electron and pro
of small molecule electrocatalysts in collaboration with experimentalists.
FieldOfScience: Chemistry
ID: '428'
InstitutionID: 'https://osg-htc.org/iid/53bzboawpaq9'
Organization: State University of New York at Binghamton
PIName: Puja Goyal
Sponsor:
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7 changes: 3 additions & 4 deletions projects/BiostatsChapple.yaml
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@@ -1,11 +1,10 @@
Description: Bayesian Clinical Trials
Department: Biostatistics
Description: Bayesian Clinical Trials
FieldOfScience: Statistics
ID: '532'
InstitutionID: 'https://osg-htc.org/iid/9idmt4uz33c1'
Organization: LSU School of Public Health
PIName: Andrew Chapple

ID: '532'

Sponsor:
CampusGrid:
Name: OSG Connect
40 changes: 18 additions & 22 deletions projects/CHTC-Staff.yaml
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@@ -1,29 +1,25 @@
Description: Group for CHTC staff who have OSG accounts
Department: Computer Sciences
Description: Group for CHTC staff who have OSG accounts
FieldOfScience: Computer Sciences
ID: '758'
InstitutionID: 'https://osg-htc.org/iid/fq8thqsj99zh'
Organization: University of Wisconsin-Madison
PIName: Miron Livny

ID: '758'

ResourceAllocations:
- ExecuteResourceGroups:
- GroupName: CHTC-ITB
LocalAllocationID: glow
SubmitResources:
- CHTC-ITB-submittest0000
Type: Other
- ExecuteResourceGroups:
- GroupName: TACC-Stampede2
LocalAllocationID: TG-DDM160003
SubmitResources:
- CHTC-XD-SUBMIT
- UChicago_OSGConnect_login04
- UChicago_OSGConnect_login05
Type: XRAC
Sponsor:
CampusGrid:
Name: OSG Connect

ResourceAllocations:
- Type: Other
SubmitResources:
- CHTC-ITB-submittest0000
ExecuteResourceGroups:
- GroupName: CHTC-ITB
LocalAllocationID: "glow"

- Type: XRAC
SubmitResources:
- CHTC-XD-SUBMIT
- UChicago_OSGConnect_login04
- UChicago_OSGConnect_login05
ExecuteResourceGroups:
# OSG allocation
- GroupName: TACC-Stampede2
LocalAllocationID: "TG-DDM160003"
5 changes: 3 additions & 2 deletions projects/CLAS12.yaml
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@@ -1,8 +1,9 @@
Description: Jefferson Laboratory Hall-B CLAS12 project
Department: Physics
Description: Jefferson Laboratory Hall-B CLAS12 project
FieldOfScience: Nuclear Physics
Organization: Jefferson Lab
ID: '582'
InstitutionID: 'https://osg-htc.org/iid/hlz41oydapzn'
Organization: Jefferson Lab
PIName: Maurizio Ungaro
Sponsor:
VirtualOrganization:
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3 changes: 1 addition & 2 deletions projects/CMU_Isayev.yaml
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Expand Up @@ -2,7 +2,6 @@ Department: Chemistry
Description: Quantum chemical and machine learning insights into supra-molecular organization
of molecular crystals.
FieldOfScience: Chemistry
InstitutionID: 'https://osg-htc.org/iid/3cqqrc2cgibl'
Organization: Carnegie-Mellon University
PIName: Olexandr Isayev


5 changes: 3 additions & 2 deletions projects/CMU_Romagnoli.yaml
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Department: Electrical and computer engineering
Description: Deep Reinforcement Learning (RL) for Secure Control of UAVs via Software Rejuvenation
Description: Deep Reinforcement Learning (RL) for Secure Control of UAVs via Software
Rejuvenation
FieldOfScience: Electrical Engineering
InstitutionID: 'https://osg-htc.org/iid/3cqqrc2cgibl'
Organization: Carnegie-Mellon University
PIName: Raffaele Romagnoli

Sponsor:
CampusGrid:
Name: OSG Connect
5 changes: 3 additions & 2 deletions projects/CMU_Viswanathan.yaml
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@@ -1,9 +1,10 @@
Department: Department of Mechanical Engineering
Description: Physics-informed machine learning algorithms to facilitate improved prediction of battery performance
Description: Physics-informed machine learning algorithms to facilitate improved prediction
of battery performance
FieldOfScience: Mechanical Engineering
InstitutionID: 'https://osg-htc.org/iid/3cqqrc2cgibl'
Organization: Carnegie-Mellon University
PIName: Venkat Viswanathan

Sponsor:
CampusGrid:
Name: OSG Connect
39 changes: 19 additions & 20 deletions projects/COVID19_LSUHSC_Chapple.yaml
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@@ -1,27 +1,26 @@
Description: "Most Bayesian methods require Markov Chain Monte Carlo sampling (MCMC)
to obtain posterior distributions, which can be used for statistical inference
- and decision making during adaptive clinical trial designs. To justify any novel
statistical method or adaptive design, extensive simulation studies must be
conducted to demonstrate their effectiveness. Dr. Chapple recently used OSG to
successfully revise a novel statistical method for survival analysis relevant to COVID-19.
Such simulations, particularly for Bayesian adaptive clinical trials,
can take a tremendous amount of time to run 1,000 or more simulations for a given
scenario, and usually hundreds of scenarios are warranted to convince others of the
trial’s benefit. Dr. Chapple has used 435 thousand core hours to develop clinical
trial designs for testing safety of new agents in pediatric brain tumors, testing
multiple COVID-19 therapies simultaneously, and determining optimal treatments
based on patient subgroups. Without OSG, it would not have been possible to start
enrolling patients in a 3-treatment armed COVID-19 trial at University Medical
Center in New Orleans, LA. Based upon that success, Chapple will also demonstrate
the same approach for 5 treatment arms, and also for subgroups (based on
comorbidities, age, etc), and publish the trial design in a statistical journal."
Department: Biostatistics
Description: Most Bayesian methods require Markov Chain Monte Carlo sampling (MCMC)
to obtain posterior distributions, which can be used for statistical inference
- and decision making during adaptive clinical trial designs. To justify any novel
statistical method or adaptive design, extensive simulation studies must be conducted
to demonstrate their effectiveness. Dr. Chapple recently used OSG to successfully
revise a novel statistical method for survival analysis relevant to COVID-19. Such
simulations, particularly for Bayesian adaptive clinical trials, can take a tremendous
amount of time to run 1,000 or more simulations for a given scenario, and usually
hundreds of scenarios are warranted to convince others of the trial’s benefit.
Dr. Chapple has used 435 thousand core hours to develop clinical trial designs for
testing safety of new agents in pediatric brain tumors, testing multiple COVID-19
therapies simultaneously, and determining optimal treatments based on patient subgroups.
Without OSG, it would not have been possible to start enrolling patients in a 3-treatment
armed COVID-19 trial at University Medical Center in New Orleans, LA. Based upon
that success, Chapple will also demonstrate the same approach for 5 treatment arms,
and also for subgroups (based on comorbidities, age, etc), and publish the trial
design in a statistical journal.
FieldOfScience: Health
ID: '671'
InstitutionID: 'https://osg-htc.org/iid/9idmt4uz33c1'
Organization: LSU School of Public Health
PIName: Andrew Chapple

ID: '671'

Sponsor:
CampusGrid:
Name: OSG Connect
1 change: 1 addition & 0 deletions projects/COVID19_UNL_Weitzel.yaml
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Expand Up @@ -2,6 +2,7 @@ Department: Computer Science and Engineering
Description: Testing of Folding at Home on the Open Science Grid, for COVID-19; https://foldingathome.org/covid19/
FieldOfScience: Computer Science
ID: '662'
InstitutionID: 'https://osg-htc.org/iid/q9k1b8dfrw25'
Organization: University of Nebraska-Lincoln
PIName: Derek Weitzel
Sponsor:
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7 changes: 3 additions & 4 deletions projects/CSUSB_ITS.yaml
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@@ -1,11 +1,10 @@
Description: Group for CSUSB staff supporting research computing.
Department: Information Technology
Description: Group for CSUSB staff supporting research computing.
FieldOfScience: Computer Sciences
ID: '799'
InstitutionID: 'https://osg-htc.org/iid/wra3vmvyvmgd'
Organization: California State University, San Bernadino
PIName: Dung Vu

ID: '799'

Sponsor:
CampusGrid:
Name: OSG Connect
4 changes: 3 additions & 1 deletion projects/CUNYBrooklyn_Juszczak.yaml
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@@ -1,7 +1,9 @@
Department: Chemistry
Description: Mapping molecular level electron density in cation-aromatic pi electron interactions
Description: Mapping molecular level electron density in cation-aromatic pi electron
interactions
FieldOfScience: Chemistry
ID: '719'
InstitutionID: 'https://osg-htc.org/iid/lbg0jt5w2rks'
Organization: CUNY Brooklyn College
PIName: Laura Juszczak
Sponsor:
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7 changes: 3 additions & 4 deletions projects/CampusWorkshop_Feb2021.yaml
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@@ -1,11 +1,10 @@
Description: accounts for Feb 8 2021 campus workshop
Department: Computer Sciences
Description: accounts for Feb 8 2021 campus workshop
FieldOfScience: Training
ID: '759'
InstitutionID: 'https://osg-htc.org/iid/fq8thqsj99zh'
Organization: University of Wisconsin-Madison
PIName: Christina Koch

ID: '759'

Sponsor:
CampusGrid:
Name: OSG Connect
7 changes: 3 additions & 4 deletions projects/CloudTemplate.yaml
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@@ -1,11 +1,10 @@
Description: Cloud Custom Template for Non-Experts
Department: Electrical Engineering and Computer Science
Description: Cloud Custom Template for Non-Experts
FieldOfScience: Computer Science
ID: '540'
InstitutionID: 'https://osg-htc.org/iid/dohu2f6ba08u'
Organization: University of Missouri-Columbia
PIName: Prasad Calyam

ID: '540'

Sponsor:
CampusGrid:
Name: OSG Connect
1 change: 1 addition & 0 deletions projects/ConnectTrain.yaml
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Expand Up @@ -2,6 +2,7 @@ Department: Research Facilitation
Description: OSG user training activity.
FieldOfScience: Training
ID: '20'
InstitutionID: 'https://osg-htc.org/iid/8hgx4a4ptpt9'
Organization: Open Science Grid
PIName: Christina Koch
Sponsor:
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27 changes: 14 additions & 13 deletions projects/CotranslationalFolding.yaml
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@@ -1,19 +1,20 @@
Department: Chemistry
Description: "There is now a large body of experimental evidence that the ability\
\ of many proteins to reach full functionality in a cell depends strongly on the\
\ rate at which individual codons are translated by the ribosome during protein\
\ synthesis. This project aims to demonstrate that, counter to conventional wisdom,\
\ fast-translating codons can help coordinate co-translational protein folding by\
\ minimizing misfolding [O\u2019Brien, Nature Comm. 2014]. To do this we will use\
\ a two-step approach: First (Aim 1), we will utilize coarse-grained molecular dynamics\
\ simulations in combination with a genetic algorithm to find the optimal codon\
\ translation rate profile that maximizes the co-translational folding of a protein.\
\ And then (Aim 2) mutate, in silico, fast-translating codon positions to slower\
\ rates to test, if as predicted, we observe a concomitant decrease in the amount\
\ of co-translational folding. The results of this study will provide a new computational\
\ tool for the rational design of mRNA sequences to control nascent proten behavior."
Description: 'There is now a large body of experimental evidence that the ability
of many proteins to reach full functionality in a cell depends strongly on the rate
at which individual codons are translated by the ribosome during protein synthesis.
This project aims to demonstrate that, counter to conventional wisdom, fast-translating
codons can help coordinate co-translational protein folding by minimizing misfolding
[O’Brien, Nature Comm. 2014]. To do this we will use a two-step approach: First
(Aim 1), we will utilize coarse-grained molecular dynamics simulations in combination
with a genetic algorithm to find the optimal codon translation rate profile that
maximizes the co-translational folding of a protein. And then (Aim 2) mutate, in
silico, fast-translating codon positions to slower rates to test, if as predicted,
we observe a concomitant decrease in the amount of co-translational folding. The
results of this study will provide a new computational tool for the rational design
of mRNA sequences to control nascent proten behavior.'
FieldOfScience: Biophysics
ID: '110'
InstitutionID: 'https://osg-htc.org/iid/f1tlj6c19ppg'
Organization: The Pennsylvania State University
PIName: Edward O'Brien
Sponsor:
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1 change: 1 addition & 0 deletions projects/DES.yaml
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Expand Up @@ -2,6 +2,7 @@ Department: N/A
Description: Project entry corresponding to the Dark Energy Survey (DES) VO.
FieldOfScience: Astrophysics
ID: '492'
InstitutionID: 'https://osg-htc.org/iid/ik4s3ql8u1j7'
Organization: Fermilab
PIName: Nikolay Kuropatkin
Sponsor:
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32 changes: 14 additions & 18 deletions projects/DESDM.yaml
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@@ -1,25 +1,21 @@
Description: The Dark Energy Survey (DES) is about to complete its five-year
observing program. This consists of a 5000 square-degree wide field
survey in 5 optical bands of the Southern sky and a 30 square-degree
deep supernova survey with the aim to understand the nature of Dark
Energy and the accelerating Universe. DES uses the 3 square-degree CCD
camera (DECam), installed at the prime focus of the Blanco 4-m to record
the positions and shapes of 300 million galaxies up to redshift 1.4.
During a normal night of observations, DES produces about 1 TB of raw
data, including science and calibration images, which are transported
automatically from Chile to the National Center for Supercomputing
Applications in Urbana, Illinois to be archived and reduced. The
DES Data Management system (DESDM) is in charge of the processing,
calibration and archiving of these data into science-ready data products
for analysis by the DES Collaboration and the public.
Department: N/A
Description: The Dark Energy Survey (DES) is about to complete its five-year observing
program. This consists of a 5000 square-degree wide field survey in 5 optical bands
of the Southern sky and a 30 square-degree deep supernova survey with the aim to
understand the nature of Dark Energy and the accelerating Universe. DES uses the
3 square-degree CCD camera (DECam), installed at the prime focus of the Blanco 4-m
to record the positions and shapes of 300 million galaxies up to redshift 1.4. During
a normal night of observations, DES produces about 1 TB of raw data, including science
and calibration images, which are transported automatically from Chile to the National
Center for Supercomputing Applications in Urbana, Illinois to be archived and reduced.
The DES Data Management system (DESDM) is in charge of the processing, calibration
and archiving of these data into science-ready data products for analysis by the
DES Collaboration and the public.
FieldOfScience: Astronomy
ID: '523'
InstitutionID: 'https://osg-htc.org/iid/ypnvkgxa67oy'
Organization: National Center for Supercomputing Applications (NCSA)
PIName: Don Petravick

ID: '523'

Sponsor:
CampusGrid:
Name: OSG Connect

1 change: 1 addition & 0 deletions projects/DOSAR.yaml
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Expand Up @@ -4,6 +4,7 @@ Description: Distributed Organization for Scientific Academic Research. Internat
like to maintain accounts on OSG.
FieldOfScience: Education
ID: '355'
InstitutionID: 'https://osg-htc.org/iid/xvsrc4eixk2g'
Organization: DOSAR
PIName: Rob Quick
Sponsor:
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