Moved bower dependencies to app/vendor.

.bowerrc

@@ -0,0 +1,3 @@
+{
+  "directory": "app/vendor"
+}

app/index.html.template

@@ -9,8 +9,8 @@
     OpenMRS Module Repository
   </title>
 
-  <link rel="stylesheet" href="lib/bootstrap/css/bootstrap.min.css">
-  <link rel="stylesheet" href="lib/angular/angular-csp.css">
+  <link rel="stylesheet" href="vendor/bootstrap/dist/css/bootstrap.min.css">
+  <link rel="stylesheet" href="vendor/angular/angular-csp.css">
   <link rel="stylesheet" href="css/app.css"/>
 
   <!-- HTML5 Shim and Respond.js IE8 support of HTML5 elements and media queries -->
@@ -55,12 +55,14 @@
 
     </header>
 
-    <div class="row alerts ng-hide" ng-controller="AlertCtrl" ng-repeat="alert in alerts">
+    <aside class="row alerts">
 
-      <div class="alert alert-{{type}}">{{description}}</div>
-    </div>
+      <p ng-repeat="alert in $root.alerts" class="alert alert-{{alert.type}}">
+        {{alert.content}}
+      </p>
+    </aside>
 
-    <div ng-view class="clearfix" ng-class="$root.controller"></div>
+    <section ng-view class="clearfix" ng-class="$root.controller"></section>
 
     <noscript>
       <p class="lead text-center">Unfortunatly, JavaScript is required to use the Module Repository.</p>
@@ -74,22 +76,21 @@
   </div>
 
 
-  <script src="https://code.jquery.com/jquery.js"></script>
+  <script src="https://code.jquery.com/jquery.min.js"></script>
   <!-- Include all compiled plugins (below), or include individual files as needed -->
-  <script src="lib/bootstrap/js/bootstrap.min.js"></script>
-  <script src="lib/lodash/lodash.min.js"></script>
-  <script src="lib/angular-file-upload/angular-file-upload-shim.min.js"></script>
+  <script src="vendor/bootstrap/dist/js/bootstrap.min.js"></script>
+  <script src="vendor/lodash/dist/lodash.min.js"></script>
+  <script src="vendor/danialfarid-angular-file-upload/dist/angular-file-upload-shim.min.js"></script>
 
 
   <!-- In production use:
   <script src="//ajax.googleapis.com/ajax/libs/angularjs/x.x.x/angular.min.js"></script>
   -->
-  <script src="lib/angular/angular.js"></script>
-  <script src="lib/angular/angular-route.js"></script>
-  <script src="lib/angular/angular-resource.js"></script><!-- TODO: remove -->
-  <script src="lib/restangular/restangular.min.js"></script>
-  <script src="lib/xeditable/xeditable.min.js"></script>
-  <script src="lib/angular-file-upload/angular-file-upload.min.js"></script> 
+  <script src="vendor/angular/angular.min.js"></script>
+  <script src="vendor/angular-route/angular-route.min.js"></script>
+  <script src="vendor/restangular/dist/restangular.min.js"></script>
+  <script src="vendor/angular-xeditable/dist/js/xeditable.min.js"></script>
+  <script src="vendor/danialfarid-angular-file-upload/dist/angular-file-upload.min.js"></script> 
 
   <script src="js/app.js"></script>
   <script src="js/services.js"></script>
@@ -99,7 +100,7 @@
   <script src="js/filters.js"></script>
   <script src="js/directives.js"></script>
 
-  <link rel="stylesheet" href="lib/xeditable/xeditable.css">
+  <link rel="stylesheet" href="vendor/angular-xeditable/dist/css/xeditable.css">
 
 </body>
 </html>

app/js/app.js

@@ -1,7 +1,6 @@
 // Declare app level module which depends on filters, and services
 angular.module('modulusOne', [
   'ngRoute',
-  'ngResource',
   'restangular',
   'modulusOne.filters',
   'modulusOne.services',