Skip to content

Commit

Permalink
Merge pull request #4658 from openjournals/joss.05669
Browse files Browse the repository at this point in the history
Merging automatically
  • Loading branch information
editorialbot authored Oct 5, 2023
2 parents 927fc3d + 8c0f5df commit cb2df24
Show file tree
Hide file tree
Showing 6 changed files with 1,230 additions and 0 deletions.
334 changes: 334 additions & 0 deletions joss.05669/10.21105.joss.05669.crossref.xml
Original file line number Diff line number Diff line change
@@ -0,0 +1,334 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/5.3.1"
xmlns:ai="http://www.crossref.org/AccessIndicators.xsd"
xmlns:rel="http://www.crossref.org/relations.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="5.3.1"
xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd">
<head>
<doi_batch_id>20231005T142528-7629ccf74bc26a7da06cb383c5682879dd9eef18</doi_batch_id>
<timestamp>20231005142528</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>10</month>
<year>2023</year>
</publication_date>
<journal_volume>
<volume>8</volume>
</journal_volume>
<issue>90</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>OceanBioME.jl: A flexible environment for modelling the
coupled interactions between ocean biogeochemistry and physics</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Jago</given_name>
<surname>Strong-Wright</surname>
<ORCID>https://orcid.org/0000-0002-7174-5283</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Si</given_name>
<surname>Chen</surname>
<ORCID>https://orcid.org/0009-0002-1296-7166</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Navid C</given_name>
<surname>Constantinou</surname>
<ORCID>https://orcid.org/0000-0002-8149-4094</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Simone</given_name>
<surname>Silvestri</surname>
<ORCID>https://orcid.org/0000-0002-7156-946X</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>Gregory LeClaire</given_name>
<surname>Wagner</surname>
<ORCID>https://orcid.org/0000-0001-5317-2445</ORCID>
</person_name>
<person_name sequence="additional"
contributor_role="author">
<given_name>John R</given_name>
<surname>Taylor</surname>
<ORCID>https://orcid.org/0000-0002-1292-3756</ORCID>
</person_name>
</contributors>
<publication_date>
<month>10</month>
<day>05</day>
<year>2023</year>
</publication_date>
<pages>
<first_page>5669</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">10.21105/joss.05669</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281/zenodo.8403490</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/5669</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>10.21105/joss.05669</doi>
<resource>https://joss.theoj.org/papers/10.21105/joss.05669</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.05669.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="Oceananigans">
<article_title>Oceananigans.jl: Fast and friendly
geophysical fluid dynamics on GPUs</article_title>
<author>Ramadhan</author>
<journal_title>Journal of Open Source
Software</journal_title>
<issue>53</issue>
<volume>5</volume>
<doi>10.21105/joss.02018</doi>
<cYear>2020</cYear>
<unstructured_citation>Ramadhan, A., Wagner, G. L., Hill,
C., Jean-Michel, C., Churavy, V., Souza, A., Edelman, A., Ferrari, R.,
&amp; Marshall, J. (2020). Oceananigans.jl: Fast and friendly
geophysical fluid dynamics on GPUs. Journal of Open Source Software,
5(53), 2018. https://doi.org/10.21105/joss.02018</unstructured_citation>
</citation>
<citation key="lobster">
<article_title>A four-dimensional mesoscale map of the
spring bloom in the northeast Atlantic (POMME experiment): Results of a
prognostic model</article_title>
<author>Lévy</author>
<journal_title>Journal of Geophysical Research C:
Oceans</journal_title>
<volume>110</volume>
<doi>10.1029/2004JC002588</doi>
<cYear>2005</cYear>
<unstructured_citation>Lévy, M., Gavart, M., Mémery, L.,
Caniaux, G., &amp; Paci, A. (2005). A four-dimensional mesoscale map of
the spring bloom in the northeast Atlantic (POMME experiment): Results
of a prognostic model. Journal of Geophysical Research C: Oceans, 110,
1–23. https://doi.org/10.1029/2004JC002588</unstructured_citation>
</citation>
<citation key="wanninkhof:1992">
<article_title>Relationship between wind speed and gas
exchange over the ocean</article_title>
<author>Wanninkhof</author>
<journal_title>Journal of Geophysical
Research</journal_title>
<volume>97</volume>
<doi>10.1029/92JC00188</doi>
<cYear>1992</cYear>
<unstructured_citation>Wanninkhof, R. (1992). Relationship
between wind speed and gas exchange over the ocean. Journal of
Geophysical Research, 97, 7373–7382.
https://doi.org/10.1029/92JC00188</unstructured_citation>
</citation>
<citation key="soetaert:2000">
<article_title>On the coupling of benthic and pelagic
biogeochemical models</article_title>
<author>Soetaert</author>
<journal_title>Earth-Science Reviews</journal_title>
<volume>51</volume>
<doi>10.1016/S0012-8252(00)00004-0</doi>
<cYear>2000</cYear>
<unstructured_citation>Soetaert, K., Middelburg, J. J.,
Herman, P. M. J., &amp; Buis, K. (2000). On the coupling of benthic and
pelagic biogeochemical models. In Earth-Science Reviews (Vol. 51, pp.
173–201).
https://doi.org/10.1016/S0012-8252(00)00004-0</unstructured_citation>
</citation>
<citation key="makie">
<article_title>Makie.jl: Flexible high-performance data
visualization for Julia</article_title>
<author>Danisch</author>
<journal_title>Journal of Open Source
Software</journal_title>
<issue>65</issue>
<volume>6</volume>
<doi>10.21105/joss.03349</doi>
<cYear>2021</cYear>
<unstructured_citation>Danisch, S., &amp; Krumbiegel, J.
(2021). Makie.jl: Flexible high-performance data visualization for
Julia. Journal of Open Source Software, 6(65), 3349.
https://doi.org/10.21105/joss.03349</unstructured_citation>
</citation>
<citation key="npzd">
<article_title>Model investigations of the North Atlantic
spring bloom initiation</article_title>
<author>Kuhn</author>
<journal_title>Progress in Oceanography</journal_title>
<volume>138</volume>
<doi>10.1016/j.pocean.2015.07.004</doi>
<issn>0079-6611</issn>
<cYear>2015</cYear>
<unstructured_citation>Kuhn, A. M., Fennel, K., &amp;
Mattern, J. P. (2015). Model investigations of the North Atlantic spring
bloom initiation. Progress in Oceanography, 138, 176–193.
https://doi.org/10.1016/j.pocean.2015.07.004</unstructured_citation>
</citation>
<citation key="ekp">
<article_title>EnsembleKalmanProcesses.jl: Derivative-free
ensemble-based model calibration</article_title>
<author>Dunbar</author>
<journal_title>Journal of Open Source
Software</journal_title>
<issue>80</issue>
<volume>7</volume>
<doi>10.21105/joss.04869</doi>
<cYear>2022</cYear>
<unstructured_citation>Dunbar, O. R. a., Lopez-Gomez, I.,
Garbuno-Iñigo, A., Huang, D. Z., Bach, E., &amp; Wu, J. (2022).
EnsembleKalmanProcesses.jl: Derivative-free ensemble-based model
calibration. Journal of Open Source Software, 7(80), 4869.
https://doi.org/10.21105/joss.04869</unstructured_citation>
</citation>
<citation key="broch:2012">
<article_title>Modelling seasonal growth and composition of
the kelp Saccharina latissima</article_title>
<author>Broch</author>
<journal_title>Journal of Applied Phycology</journal_title>
<volume>24</volume>
<doi>10.1007/s10811-011-9695-y</doi>
<cYear>2012</cYear>
<unstructured_citation>Broch, O. J., &amp; Slagstad, D.
(2012). Modelling seasonal growth and composition of the kelp Saccharina
latissima. Journal of Applied Phycology, 24, 759–776.
https://doi.org/10.1007/s10811-011-9695-y</unstructured_citation>
</citation>
<citation key="julia">
<article_title>Julia: A fresh approach to numerical
computing</article_title>
<author>Bezanson</author>
<journal_title>SIAM Review</journal_title>
<issue>1</issue>
<volume>59</volume>
<doi>10.1137/141000671</doi>
<cYear>2017</cYear>
<unstructured_citation>Bezanson, J., Edelman, A., Karpinski,
S., &amp; Shah, V. B. (2017). Julia: A fresh approach to numerical
computing. SIAM Review, 59(1), 65–98.
https://doi.org/10.1137/141000671</unstructured_citation>
</citation>
<citation key="Friedlingstein2022">
<article_title>Global Carbon Budget 2021</article_title>
<author>Friedlingstein</author>
<journal_title>Earth System Science Data</journal_title>
<issue>4</issue>
<volume>14</volume>
<doi>10.5194/essd-14-1917-2022</doi>
<cYear>2022</cYear>
<unstructured_citation>Friedlingstein, P., Jones, M. W.,
O’Sullivan, M., Andrew, R. M., Bakker, D. C. E., Hauck, J., Le Quéré,
C., Peters, G. P., Peters, W., Pongratz, J., Sitch, S., Canadell, J. G.,
Ciais, P., Jackson, R. B., Alin, S. R., Anthoni, P., Bates, N. R.,
Becker, M., Bellouin, N., … Zeng, J. (2022). Global Carbon Budget 2021.
Earth System Science Data, 14(4), 1917–2005.
https://doi.org/10.5194/essd-14-1917-2022</unstructured_citation>
</citation>
<citation key="NationalAcademies2022">
<volume_title>A research strategy for ocean-based carbon
dioxide removal and sequestration</volume_title>
<author>National Academies of Sciences</author>
<doi>10.17226/26278</doi>
<cYear>2022</cYear>
<unstructured_citation>National Academies of Sciences,
Engineering, &amp; Medicine. (2022). A research strategy for ocean-based
carbon dioxide removal and sequestration. The National Academies Press.
https://doi.org/10.17226/26278</unstructured_citation>
</citation>
<citation key="taylor:2016">
<article_title>Turbulent mixing, restratification, and
phytoplankton growth at a submesoscale eddy</article_title>
<author>Taylor</author>
<journal_title>Geophysical Research Letters</journal_title>
<volume>43</volume>
<doi>10.1002/2016GL069106</doi>
<cYear>2016</cYear>
<unstructured_citation>Taylor, J. R. (2016). Turbulent
mixing, restratification, and phytoplankton growth at a submesoscale
eddy. Geophysical Research Letters, 43, 5784–5792.
https://doi.org/10.1002/2016GL069106</unstructured_citation>
</citation>
<citation key="SimoesSousa2022">
<article_title>Mixed layer eddies supply nutrients to
enhance the spring phytoplankton bloom</article_title>
<author>Simoes-Sousa</author>
<journal_title>Frontiers in Marine Science</journal_title>
<volume>9</volume>
<doi>10.3389/fmars.2022.825027</doi>
<cYear>2022</cYear>
<unstructured_citation>Simoes-Sousa, I. T., Tandon, A.,
Pereira, F., Lazaneo, C. Z., &amp; Mahadevan, A. (2022). Mixed layer
eddies supply nutrients to enhance the spring phytoplankton bloom.
Frontiers in Marine Science, 9, 825027.
https://doi.org/10.3389/fmars.2022.825027</unstructured_citation>
</citation>
<citation key="CUDA">
<article_title>Effective extensible programming: Unleashing
julia on GPUs</article_title>
<author>Besard</author>
<journal_title>IEEE Transactions on Parallel and Distributed
Systems</journal_title>
<issue>4</issue>
<volume>30</volume>
<doi>10.1109/TPDS.2018.2872064</doi>
<cYear>2019</cYear>
<unstructured_citation>Besard, T., Foket, C., &amp; De
Sutter, B. (2019). Effective extensible programming: Unleashing julia on
GPUs. IEEE Transactions on Parallel and Distributed Systems, 30(4),
827–841.
https://doi.org/10.1109/TPDS.2018.2872064</unstructured_citation>
</citation>
<citation key="KA">
<article_title>JuliaGPU/KernelAbstractions.jl:
v0.9.8</article_title>
<author>Churavy</author>
<doi>10.5281/zenodo.8176369</doi>
<cYear>2023</cYear>
<unstructured_citation>Churavy, V., Aluthge, D., Smirnov,
A., Samaroo, J., Schloss, J., Wilcox, L. C., Byrne, S., Besard, T.,
Waruszewski, M., Ramadhan, A., &amp; al., et. (2023).
JuliaGPU/KernelAbstractions.jl: v0.9.8.
https://doi.org/10.5281/zenodo.8176369</unstructured_citation>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Loading

0 comments on commit cb2df24

Please sign in to comment.