Skip to content

Commit

Permalink
Merge pull request #6157 from openjournals/joss.06442
Browse files Browse the repository at this point in the history 
Merging automatically
  • Loading branch information
@editorialbot
editorialbot authored Nov 18, 2024
2 parents 6f530cc + 9ef4dae commit c3b68d1
Show file tree
Hide file tree
Showing 3 changed files with 1,125 additions and 0 deletions.
361 changes: 361 additions & 0 deletions joss.06442/10.21105.joss.06442.crossref.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,361 @@
<?xml version="1.0" encoding="UTF-8"?>
<doi_batch xmlns="http://www.crossref.org/schema/5.3.1"
xmlns:ai="http://www.crossref.org/AccessIndicators.xsd"
xmlns:rel="http://www.crossref.org/relations.xsd"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="5.3.1"
xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd">
<head>
<doi_batch_id>20241118220618-8129ff2a2df4bef2839330431ac288bbaf1c3ff9</doi_batch_id>
<timestamp>20241118220618</timestamp>
<depositor>
<depositor_name>JOSS Admin</depositor_name>
<email_address>[email protected]</email_address>
</depositor>
<registrant>The Open Journal</registrant>
</head>
<body>
<journal>
<journal_metadata>
<full_title>Journal of Open Source Software</full_title>
<abbrev_title>JOSS</abbrev_title>
<issn media_type="electronic">2475-9066</issn>
<doi_data>
<doi>10.21105/joss</doi>
<resource>https://joss.theoj.org</resource>
</doi_data>
</journal_metadata>
<journal_issue>
<publication_date media_type="online">
<month>11</month>
<year>2024</year>
</publication_date>
<journal_volume>
<volume>9</volume>
</journal_volume>
<issue>103</issue>
</journal_issue>
<journal_article publication_type="full_text">
<titles>
<title>PythonicDISORT: A Python reimplementation of the
Discrete Ordinate Radiative Transfer package DISORT</title>
</titles>
<contributors>
<person_name sequence="first" contributor_role="author">
<given_name>Dion J. X.</given_name>
<surname>Ho</surname>
<affiliations>
<institution><institution_name>Columbia University, Department of Applied Physics and Applied Mathematics, United States of America</institution_name></institution>
</affiliations>
<ORCID>https://orcid.org/0009-0000-5829-5081</ORCID>
</person_name>
</contributors>
<publication_date>
<month>11</month>
<day>18</day>
<year>2024</year>
</publication_date>
<pages>
<first_page>6442</first_page>
</pages>
<publisher_item>
<identifier id_type="doi">10.21105/joss.06442</identifier>
</publisher_item>
<ai:program name="AccessIndicators">
<ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
<ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref>
</ai:program>
<rel:program>
<rel:related_item>
<rel:description>Software archive</rel:description>
<rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281/zenodo.14002490</rel:inter_work_relation>
</rel:related_item>
<rel:related_item>
<rel:description>GitHub review issue</rel:description>
<rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/6442</rel:inter_work_relation>
</rel:related_item>
</rel:program>
<doi_data>
<doi>10.21105/joss.06442</doi>
<resource>https://joss.theoj.org/papers/10.21105/joss.06442</resource>
<collection property="text-mining">
<item>
<resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.06442.pdf</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="Wis1977">
<article_title>The delta–M method: Rapid yet accurate
radiative flux calculations for strongly asymmetric phase
functions</article_title>
<author>Wiscombe</author>
<journal_title>Journal of Atmospheric
Sciences</journal_title>
<issue>9</issue>
<volume>34</volume>
<doi>10.1175/1520-0469(1977)034&lt;1408:TDMRYA&gt;2.0.CO;2</doi>
<cYear>1977</cYear>
<unstructured_citation>Wiscombe, W. J. (1977). The delta–M
method: Rapid yet accurate radiative flux calculations for strongly
asymmetric phase functions. Journal of Atmospheric Sciences, 34(9),
1408–1422.
https://doi.org/10.1175/1520-0469(1977)034&lt;1408:TDMRYA&gt;2.0.CO;2</unstructured_citation>
</citation>
<citation key="NT1988">
<article_title>Algorithms for radiative intensity
calculations in moderately thick atmospheres using a truncation
approximation</article_title>
<author>Nakajima</author>
<journal_title>Journal of Quantitative Spectroscopy and
Radiative Transfer</journal_title>
<issue>1</issue>
<volume>40</volume>
<doi>10.1016/0022-4073(88)90031-3</doi>
<issn>0022-4073</issn>
<cYear>1988</cYear>
<unstructured_citation>Nakajima, T., &amp; Tanaka, M.
(1988). Algorithms for radiative intensity calculations in moderately
thick atmospheres using a truncation approximation. Journal of
Quantitative Spectroscopy and Radiative Transfer, 40(1), 51–69.
https://doi.org/10.1016/0022-4073(88)90031-3</unstructured_citation>
</citation>
<citation key="HP2024">
<article_title>Two-streams revisited: General equations,
exact coefficients, and optimized closures</article_title>
<author>Ho</author>
<journal_title>Journal of Advances in Modeling Earth
Systems</journal_title>
<issue>10</issue>
<volume>16</volume>
<doi>10.1029/2024MS004504</doi>
<cYear>2024</cYear>
<unstructured_citation>Ho, D. J. X., &amp; Pincus, R.
(2024). Two-streams revisited: General equations, exact coefficients,
and optimized closures. Journal of Advances in Modeling Earth Systems,
16(10), e2024MS004504.
https://doi.org/10.1029/2024MS004504</unstructured_citation>
</citation>
<citation key="TLZWSY2020">
<article_title>Retrieval of ice-over-water cloud
microphysical and optical properties using passive
radiometers</article_title>
<author>Teng</author>
<journal_title>Geophysical Research Letters</journal_title>
<issue>16</issue>
<volume>47</volume>
<doi>10.1029/2020GL088941</doi>
<cYear>2020</cYear>
<unstructured_citation>Teng, S., Liu, C., Zhang, Z., Wang,
Y., Sohn, B.-J., &amp; Yung, Y. L. (2020). Retrieval of ice-over-water
cloud microphysical and optical properties using passive radiometers.
Geophysical Research Letters, 47(16), e2020GL088941.
https://doi.org/10.1029/2020GL088941</unstructured_citation>
</citation>
<citation key="TCCGL1999">
<article_title>Retrieval of aerosol properties over the
ocean using global ozone monitoring experiment measurements: Method and
applications to test cases</article_title>
<author>Torricella</author>
<journal_title>Journal of Geophysical Research:
Atmospheres</journal_title>
<issue>D10</issue>
<volume>104</volume>
<doi>10.1029/1999JD900040</doi>
<cYear>1999</cYear>
<unstructured_citation>Torricella, F., Cattani, E., Cervino,
M., Guzzi, R., &amp; Levoni, C. (1999). Retrieval of aerosol properties
over the ocean using global ozone monitoring experiment measurements:
Method and applications to test cases. Journal of Geophysical Research:
Atmospheres, 104(D10), 12085–12098.
https://doi.org/10.1029/1999JD900040</unstructured_citation>
</citation>
<citation key="MRO/CRISM2008">
<article_title>MRO/CRISM retrieval of surface lambert
albedos for multispectral mapping of mars with DISORT-based radiative
transfer modeling: Phase 1—using historical climatology for
temperatures, aerosol optical depths, and atmospheric
pressures</article_title>
<author>McGuire</author>
<journal_title>IEEE Transactions on Geoscience and Remote
Sensing</journal_title>
<issue>12</issue>
<volume>46</volume>
<doi>10.1109/TGRS.2008.2000631</doi>
<cYear>2008</cYear>
<unstructured_citation>McGuire, P. C., Wolff, M. J., Smith,
M. D., Arvidson, R. E., Murchie, S. L., Clancy, R. T., Roush, T. L.,
Cull, S. C., Lichtenberg, K. A., Wiseman, S. M., Green, R. O., Martin,
T. Z., Milliken, R. E., Cavender, P. J., Humm, D. C., Seelos, F. P.,
Seelos, K. D., Taylor, H. W., Ehlmann, B. L., … Malaret, E. R. (2008).
MRO/CRISM retrieval of surface lambert albedos for multispectral mapping
of mars with DISORT-based radiative transfer modeling: Phase 1—using
historical climatology for temperatures, aerosol optical depths, and
atmospheric pressures. IEEE Transactions on Geoscience and Remote
Sensing, 46(12), 4020–4040.
https://doi.org/10.1109/TGRS.2008.2000631</unstructured_citation>
</citation>
<citation key="JupyterNotebook">
<article_title>Jupyter notebooks – a publishing format for
reproducible computational workflows</article_title>
<author>Kluyver</author>
<cYear>2016</cYear>
<unstructured_citation>Kluyver, T., Ragan-Kelley, B., Pérez,
F., Granger, B., Bussonnier, M., Frederic, J., Kelley, K., Hamrick, J.,
Grout, J., Corlay, S., Ivanov, P., Avila, D., Abdalla, S., &amp;
Willing, C. (2016). Jupyter notebooks – a publishing format for
reproducible computational workflows (F. Loizides &amp; B. Schmidt,
Eds.; pp. 87–90). IOS Press.</unstructured_citation>
</citation>
<citation key="SciPy">
<article_title>SciPy 1.0: Fundamental Algorithms for
Scientific Computing in Python</article_title>
<author>Virtanen</author>
<journal_title>Nature Methods</journal_title>
<volume>17</volume>
<doi>10.1038/s41592-019-0686-2</doi>
<cYear>2020</cYear>
<unstructured_citation>Virtanen, P., Gommers, R., Oliphant,
T. E., Haberland, M., Reddy, T., Cournapeau, D., Burovski, E., Peterson,
P., Weckesser, W., Bright, J., van der Walt, S. J., Brett, M., Wilson,
J., Millman, K. J., Mayorov, N., Nelson, A. R. J., Jones, E., Kern, R.,
Larson, E., … SciPy 1.0 Contributors. (2020). SciPy 1.0: Fundamental
Algorithms for Scientific Computing in Python. Nature Methods, 17,
261–272.
https://doi.org/10.1038/s41592-019-0686-2</unstructured_citation>
</citation>
<citation key="NumPy">
<article_title>Array programming with NumPy</article_title>
<author>Harris</author>
<journal_title>Nature</journal_title>
<issue>7825</issue>
<volume>585</volume>
<doi>10.1038/s41586-020-2649-2</doi>
<cYear>2020</cYear>
<unstructured_citation>Harris, C. R., Millman, K. J., Walt,
S. J. van der, Gommers, R., Virtanen, P., Cournapeau, D., Wieser, E.,
Taylor, J., Berg, S., Smith, N. J., Kern, R., Picus, M., Hoyer, S.,
Kerkwijk, M. H. van, Brett, M., Haldane, A., Río, J. F. del, Wiebe, M.,
Peterson, P., … Oliphant, T. E. (2020). Array programming with NumPy.
Nature, 585(7825), 357–362.
https://doi.org/10.1038/s41586-020-2649-2</unstructured_citation>
</citation>
<citation key="Cha1960">
<volume_title>Radiative transfer</volume_title>
<author>Chandrasekhar</author>
<cYear>1960</cYear>
<unstructured_citation>Chandrasekhar, S. (1960). Radiative
transfer. Dover.</unstructured_citation>
</citation>
<citation key="CM2020">
<article_title>pyRT_DISORT: A pre-processing front-end to
help make DISORT simulations easier in Python</article_title>
<author>Connour</author>
<cYear>2020</cYear>
<unstructured_citation>Connour, K., &amp; Wolff, M. (2020).
pyRT_DISORT: A pre-processing front-end to help make DISORT simulations
easier in Python (Version 1.0.0).
https://github.com/kconnour/pyRT_DISORT</unstructured_citation>
</citation>
<citation key="Hu2017">
<article_title>pyDISORT</article_title>
<author>Hu</author>
<cYear>2017</cYear>
<unstructured_citation>Hu, Z. (2017). pyDISORT (Version
0.8). https://github.com/chanGimeno/pyDISORT</unstructured_citation>
</citation>
<citation key="STWJ1988">
<article_title>Numerically stable algorithm for
discrete-ordinate-method radiative transfer in multiple scattering and
emitting layered media</article_title>
<author>Stamnes</author>
<journal_title>Appl. Opt.</journal_title>
<issue>12</issue>
<volume>27</volume>
<doi>10.1364/AO.27.002502</doi>
<cYear>1988</cYear>
<unstructured_citation>Stamnes, K., Tsay, S.-C., Wiscombe,
W., &amp; Jayaweera, K. (1988). Numerically stable algorithm for
discrete-ordinate-method radiative transfer in multiple scattering and
emitting layered media. Appl. Opt., 27(12), 2502–2509.
https://doi.org/10.1364/AO.27.002502</unstructured_citation>
</citation>
<citation key="Sta1999">
<article_title>LLLab disort website</article_title>
<author>Stamnes</author>
<journal_title>Light and Life Lab (LLLab)</journal_title>
<cYear>1999</cYear>
<unstructured_citation>Stamnes, S. (1999). LLLab disort
website. In Light and Life Lab (LLLab).
http://www.rtatmocn.com/disort/</unstructured_citation>
</citation>
<citation key="Ber2014">
<article_title>MODTRAN® 6: A major upgrade of the MODTRAN®
radiative transfer code</article_title>
<author>Berk</author>
<journal_title>2014 6th workshop on hyperspectral image and
signal processing: Evolution in remote sensing
(WHISPERS)</journal_title>
<doi>10.1109/WHISPERS.2014.8077573</doi>
<cYear>2014</cYear>
<unstructured_citation>Berk, A., Conforti, P., Kennett, R.,
Perkins, T., Hawes, F., &amp; Bosch, J. van den. (2014). MODTRAN® 6: A
major upgrade of the MODTRAN® radiative transfer code. 2014 6th Workshop
on Hyperspectral Image and Signal Processing: Evolution in Remote
Sensing (WHISPERS), 1–4.
https://doi.org/10.1109/WHISPERS.2014.8077573</unstructured_citation>
</citation>
<citation key="Key1998">
<article_title>Tools for atmospheric radiative transfer:
Streamer and FluxNet</article_title>
<author>Key</author>
<journal_title>Computers &amp; Geosciences</journal_title>
<issue>5</issue>
<volume>24</volume>
<doi>10.1016/S0098-3004(97)00130-1</doi>
<issn>0098-3004</issn>
<cYear>1998</cYear>
<unstructured_citation>Key, J. R., &amp; Schweiger, A. J.
(1998). Tools for atmospheric radiative transfer: Streamer and FluxNet.
Computers &amp; Geosciences, 24(5), 443–451.
https://doi.org/10.1016/S0098-3004(97)00130-1</unstructured_citation>
</citation>
<citation key="Ric1998">
<article_title>SBDART: A research and teaching software tool
for plane-parallel radiative transfer in the earth’s
atmosphere</article_title>
<author>Ricchiazzi</author>
<journal_title>Bulletin of the American Meteorological
Society</journal_title>
<issue>10</issue>
<volume>79</volume>
<doi>10.1175/1520-0477(1998)079&lt;2101:SARATS&gt;2.0.CO;2</doi>
<cYear>1998</cYear>
<unstructured_citation>Ricchiazzi, P., Yang, S., Gautier,
C., &amp; Sowle, D. (1998). SBDART: A research and teaching software
tool for plane-parallel radiative transfer in the earth’s atmosphere.
Bulletin of the American Meteorological Society, 79(10), 2101–2114.
https://doi.org/10.1175/1520-0477(1998)079&lt;2101:SARATS&gt;2.0.CO;2</unstructured_citation>
</citation>
<citation key="Syk1951">
<article_title>Approximate Integration of the Equation of
Transfer</article_title>
<author>Sykes</author>
<journal_title>Monthly Notices of the Royal Astronomical
Society</journal_title>
<issue>4</issue>
<volume>111</volume>
<doi>10.1093/mnras/111.4.377</doi>
<issn>0035-8711</issn>
<cYear>1951</cYear>
<unstructured_citation>Sykes, J. B. (1951). Approximate
Integration of the Equation of Transfer. Monthly Notices of the Royal
Astronomical Society, 111(4), 377–386.
https://doi.org/10.1093/mnras/111.4.377</unstructured_citation>
</citation>
</citation_list>
</journal_article>
</journal>
</body>
</doi_batch>
Binary file added joss.06442/10.21105.joss.06442.pdf
View file
Binary file not shown.
Loading

0 comments on commit c3b68d1

Please sign in to comment.