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| <doi_batch_id>20241125165450-f57d540279810a5dcb19535c9ed41f4a3b02eb83</doi_batch_id> | ||
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| <depositor_name>JOSS Admin</depositor_name> | ||
| <email_address>[email protected]</email_address> | ||
| </depositor> | ||
| <registrant>The Open Journal</registrant> | ||
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| <journal> | ||
| <journal_metadata> | ||
| <full_title>Journal of Open Source Software</full_title> | ||
| <abbrev_title>JOSS</abbrev_title> | ||
| <issn media_type="electronic">2475-9066</issn> | ||
| <doi_data> | ||
| <doi>10.21105/joss</doi> | ||
| <resource>https://joss.theoj.org</resource> | ||
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| <publication_date media_type="online"> | ||
| <month>11</month> | ||
| <year>2024</year> | ||
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| <volume>9</volume> | ||
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| <issue>103</issue> | ||
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| <title>Snk: A Snakemake CLI and Workflow Management | ||
| System</title> | ||
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| <given_name>Wytamma</given_name> | ||
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| <given_name>Simon</given_name> | ||
| <surname>Mutch</surname> | ||
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| <institution><institution_name>Melbourne Data Analytics Platform, University of Melbourne, Melbourne 3010, Australia</institution_name></institution> | ||
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| <ORCID>https://orcid.org/0000-0002-3166-4614</ORCID> | ||
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| <given_name>Robert</given_name> | ||
| <surname>Turnbull</surname> | ||
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| <institution><institution_name>Melbourne Data Analytics Platform, University of Melbourne, Melbourne 3010, Australia</institution_name></institution> | ||
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| <month>11</month> | ||
| <day>25</day> | ||
| <year>2024</year> | ||
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| <first_page>7410</first_page> | ||
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| <identifier id_type="doi">10.21105/joss.07410</identifier> | ||
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| <doi>10.21105/joss.07410</doi> | ||
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| <citation key="otoole_pango_2022"> | ||
| <article_title>Pango lineage designation and assignment | ||
| using SARS-CoV-2 spike gene nucleotide sequences</article_title> | ||
| <author>O’Toole</author> | ||
| <journal_title>BMC Genomics</journal_title> | ||
| <issue>1</issue> | ||
| <volume>23</volume> | ||
| <doi>10.1186/s12864-022-08358-2</doi> | ||
| <issn>1471-2164</issn> | ||
| <cYear>2022</cYear> | ||
| <unstructured_citation>O’Toole, Á., Pybus, O. G., Abram, M. | ||
| E., Kelly, E. J., & Rambaut, A. (2022). Pango lineage designation | ||
| and assignment using SARS-CoV-2 spike gene nucleotide sequences. BMC | ||
| Genomics, 23(1), 121. | ||
| https://doi.org/10.1186/s12864-022-08358-2</unstructured_citation> | ||
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| <citation key="roach_ten_2022"> | ||
| <article_title>Ten simple rules and a template for creating | ||
| workflows-as-applications</article_title> | ||
| <author>Roach</author> | ||
| <journal_title>PLOS Computational Biology</journal_title> | ||
| <issue>12</issue> | ||
| <volume>18</volume> | ||
| <doi>10.1371/journal.pcbi.1010705</doi> | ||
| <issn>1553-7358</issn> | ||
| <cYear>2022</cYear> | ||
| <unstructured_citation>Roach, M. J., Pierce-Ward, N. T., | ||
| Suchecki, R., Mallawaarachchi, V., Papudeshi, B., Handley, S. A., Brown, | ||
| C. T., Watson-Haigh, N. S., & Edwards, R. A. (2022). Ten simple | ||
| rules and a template for creating workflows-as-applications. PLOS | ||
| Computational Biology, 18(12), e1010705. | ||
| https://doi.org/10.1371/journal.pcbi.1010705</unstructured_citation> | ||
| </citation> | ||
| <citation key="10.12688/f1000research.29032.2"> | ||
| <article_title>Sustainable data analysis with snakemake | ||
| [version 2; peer review: 2 approved]</article_title> | ||
| <author>Mölder</author> | ||
| <journal_title>F1000Research</journal_title> | ||
| <issue>33</issue> | ||
| <volume>10</volume> | ||
| <doi>10.12688/f1000research.29032.2</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Mölder, F., Jablonski, K. Ph., | ||
| Letcher, B., Hall, M. B., Tomkins-Tinch, Christopher H, Sochat, V., | ||
| Forster, J., Lee, S., Twardziok, S. O., Kanitz, A., Wilm, A., Holtgrewe, | ||
| M., Rahmann, S., Nahnsen, S., & Köster, J. (2021). Sustainable data | ||
| analysis with snakemake [version 2; peer review: 2 approved]. | ||
| F1000Research, 10(33). | ||
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