-
Notifications
You must be signed in to change notification settings - Fork 21
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #6277 from openjournals/joss.07522
Merging automatically
- Loading branch information
Showing
3 changed files
with
745 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,204 @@ | ||
| <?xml version="1.0" encoding="UTF-8"?> | ||
| <doi_batch xmlns="http://www.crossref.org/schema/5.3.1" | ||
| xmlns:ai="http://www.crossref.org/AccessIndicators.xsd" | ||
| xmlns:rel="http://www.crossref.org/relations.xsd" | ||
| xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" | ||
| version="5.3.1" | ||
| xsi:schemaLocation="http://www.crossref.org/schema/5.3.1 http://www.crossref.org/schemas/crossref5.3.1.xsd"> | ||
| <head> | ||
| <doi_batch_id>20241220224549-27dab46a7d93b86b945d2988301edecb4244eed8</doi_batch_id> | ||
| <timestamp>20241220224549</timestamp> | ||
| <depositor> | ||
| <depositor_name>JOSS Admin</depositor_name> | ||
| <email_address>[email protected]</email_address> | ||
| </depositor> | ||
| <registrant>The Open Journal</registrant> | ||
| </head> | ||
| <body> | ||
| <journal> | ||
| <journal_metadata> | ||
| <full_title>Journal of Open Source Software</full_title> | ||
| <abbrev_title>JOSS</abbrev_title> | ||
| <issn media_type="electronic">2475-9066</issn> | ||
| <doi_data> | ||
| <doi>10.21105/joss</doi> | ||
| <resource>https://joss.theoj.org</resource> | ||
| </doi_data> | ||
| </journal_metadata> | ||
| <journal_issue> | ||
| <publication_date media_type="online"> | ||
| <month>12</month> | ||
| <year>2024</year> | ||
| </publication_date> | ||
| <journal_volume> | ||
| <volume>9</volume> | ||
| </journal_volume> | ||
| <issue>104</issue> | ||
| </journal_issue> | ||
| <journal_article publication_type="full_text"> | ||
| <titles> | ||
| <title>DiffOpt: Parallel optimization of Jax models</title> | ||
| </titles> | ||
| <contributors> | ||
| <person_name sequence="first" contributor_role="author"> | ||
| <given_name>Alan N.</given_name> | ||
| <surname>Pearl</surname> | ||
| <affiliations> | ||
| <institution><institution_name>HEP Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA</institution_name></institution> | ||
| </affiliations> | ||
| <ORCID>https://orcid.org/0000-0001-9820-9619</ORCID> | ||
| </person_name> | ||
| <person_name sequence="additional" | ||
| contributor_role="author"> | ||
| <given_name>Gillian D.</given_name> | ||
| <surname>Beltz-Mohrmann</surname> | ||
| <affiliations> | ||
| <institution><institution_name>HEP Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA</institution_name></institution> | ||
| </affiliations> | ||
| <ORCID>https://orcid.org/0000-0002-4392-8920</ORCID> | ||
| </person_name> | ||
| <person_name sequence="additional" | ||
| contributor_role="author"> | ||
| <given_name>Andrew P.</given_name> | ||
| <surname>Hearin</surname> | ||
| <affiliations> | ||
| <institution><institution_name>HEP Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA</institution_name></institution> | ||
| </affiliations> | ||
| <ORCID>https://orcid.org/0000-0003-2219-6852</ORCID> | ||
| </person_name> | ||
| </contributors> | ||
| <publication_date> | ||
| <month>12</month> | ||
| <day>20</day> | ||
| <year>2024</year> | ||
| </publication_date> | ||
| <pages> | ||
| <first_page>7522</first_page> | ||
| </pages> | ||
| <publisher_item> | ||
| <identifier id_type="doi">10.21105/joss.07522</identifier> | ||
| </publisher_item> | ||
| <ai:program name="AccessIndicators"> | ||
| <ai:license_ref applies_to="vor">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| <ai:license_ref applies_to="am">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| <ai:license_ref applies_to="tdm">http://creativecommons.org/licenses/by/4.0/</ai:license_ref> | ||
| </ai:program> | ||
| <rel:program> | ||
| <rel:related_item> | ||
| <rel:description>Software archive</rel:description> | ||
| <rel:inter_work_relation relationship-type="references" identifier-type="doi">10.5281/zenodo.14291795</rel:inter_work_relation> | ||
| </rel:related_item> | ||
| <rel:related_item> | ||
| <rel:description>GitHub review issue</rel:description> | ||
| <rel:inter_work_relation relationship-type="hasReview" identifier-type="uri">https://github.com/openjournals/joss-reviews/issues/7522</rel:inter_work_relation> | ||
| </rel:related_item> | ||
| </rel:program> | ||
| <doi_data> | ||
| <doi>10.21105/joss.07522</doi> | ||
| <resource>https://joss.theoj.org/papers/10.21105/joss.07522</resource> | ||
| <collection property="text-mining"> | ||
| <item> | ||
| <resource mime_type="application/pdf">https://joss.theoj.org/papers/10.21105/joss.07522.pdf</resource> | ||
| </item> | ||
| </collection> | ||
| </doi_data> | ||
| <citation_list> | ||
| <citation key="jax2018github"> | ||
| <article_title>JAX: Composable transformations of Python+NumPy programs</article_title> | ||
| <author>Bradbury</author> | ||
| <cYear>2018</cYear> | ||
| <unstructured_citation>Bradbury, J., Frostig, R., Hawkins, P., Johnson, M. J., Leary, C., Maclaurin, D., Necula, G., Paszke, A., VanderPlas, J., Wanderman-Milne, S., & Zhang, Q. (2018). JAX: Composable transformations of Python+NumPy programs (Version 0.3.13). http://github.com/google/jax</unstructured_citation> | ||
| </citation> | ||
| <citation key="Hearin:2021"> | ||
| <article_title>A Differentiable Model of the Assembly of Individual and Populations of Dark Matter Halos</article_title> | ||
| <author>Hearin</author> | ||
| <journal_title>The Open Journal of Astrophysics</journal_title> | ||
| <issue>1</issue> | ||
| <volume>4</volume> | ||
| <doi>10.21105/astro.2105.05859</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Hearin, A. P., Chaves-Montero, J., Becker, M. R., & Alarcon, A. (2021). A Differentiable Model of the Assembly of Individual and Populations of Dark Matter Halos. The Open Journal of Astrophysics, 4(1), 7. https://doi.org/10.21105/astro.2105.05859</unstructured_citation> | ||
| </citation> | ||
| <citation key="Alarcon:2023"> | ||
| <article_title>Diffstar: a fully parametric physical model for galaxy assembly history</article_title> | ||
| <author>Alarcon</author> | ||
| <issue>1</issue> | ||
| <volume>518</volume> | ||
| <doi>10.1093/mnras/stac3118</doi> | ||
| <cYear>2023</cYear> | ||
| <unstructured_citation>Alarcon, A., Hearin, A. P., Becker, M. R., & Chaves-Montero, J. (2023). Diffstar: a fully parametric physical model for galaxy assembly history. 518(1), 562–584. https://doi.org/10.1093/mnras/stac3118</unstructured_citation> | ||
| </citation> | ||
| <citation key="Hearin:2023"> | ||
| <article_title>DSPS: Differentiable stellar population synthesis</article_title> | ||
| <author>Hearin</author> | ||
| <issue>2</issue> | ||
| <volume>521</volume> | ||
| <doi>10.1093/mnras/stad456</doi> | ||
| <cYear>2023</cYear> | ||
| <unstructured_citation>Hearin, A. P., Chaves-Montero, J., Alarcon, A., Becker, M. R., & Benson, A. (2023). DSPS: Differentiable stellar population synthesis. 521(2), 1741–1756. https://doi.org/10.1093/mnras/stad456</unstructured_citation> | ||
| </citation> | ||
| <citation key="Scott:1992"> | ||
| <volume_title>Multivariate density estimation: Theory, practice, and visualization</volume_title> | ||
| <author>Scott</author> | ||
| <doi>10.2307/1270280</doi> | ||
| <isbn>9780471547709</isbn> | ||
| <cYear>1992</cYear> | ||
| <unstructured_citation>Scott, D. W. (1992). Multivariate density estimation: Theory, practice, and visualization. Wiley. https://doi.org/10.2307/1270280</unstructured_citation> | ||
| </citation> | ||
| <citation key="Cramer:1954"> | ||
| <volume_title>Mathematical methods of statistics</volume_title> | ||
| <author>Cramer</author> | ||
| <cYear>1954</cYear> | ||
| <unstructured_citation>Cramer, H. (1954). Mathematical methods of statistics. Princeton Univ. Press. https://cds.cern.ch/record/107581</unstructured_citation> | ||
| </citation> | ||
| <citation key="Kennedy:1995"> | ||
| <article_title>Particle swarm optimization</article_title> | ||
| <author>Kennedy</author> | ||
| <journal_title>Proceedings of ICNN’95 - international conference on neural networks</journal_title> | ||
| <volume>4</volume> | ||
| <doi>10.1109/ICNN.1995.488968</doi> | ||
| <cYear>1995</cYear> | ||
| <unstructured_citation>Kennedy, J., & Eberhart, R. (1995). Particle swarm optimization. Proceedings of ICNN’95 - International Conference on Neural Networks, 4, 1942–1948 vol.4. https://doi.org/10.1109/ICNN.1995.488968</unstructured_citation> | ||
| </citation> | ||
| <citation key="Hafner:2021"> | ||
| <article_title>mpi4jax: Zero-copy MPI communication of JAX arrays</article_title> | ||
| <author>Häfner</author> | ||
| <journal_title>Journal of Open Source Software</journal_title> | ||
| <issue>65</issue> | ||
| <volume>6</volume> | ||
| <doi>10.21105/joss.03419</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Häfner, D., & Vicentini, F. (2021). mpi4jax: Zero-copy MPI communication of JAX arrays. Journal of Open Source Software, 6(65), 3419. https://doi.org/10.21105/joss.03419</unstructured_citation> | ||
| </citation> | ||
| <citation key="Gray:2019"> | ||
| <article_title>OpenMDAO: An open-source framework for multidisciplinary design, analysis, and optimization</article_title> | ||
| <author>Gray</author> | ||
| <journal_title>Structural and Multidisciplinary Optimization</journal_title> | ||
| <issue>4</issue> | ||
| <volume>59</volume> | ||
| <doi>10.1007/s00158-019-02211-z</doi> | ||
| <cYear>2019</cYear> | ||
| <unstructured_citation>Gray, J. S., Hwang, J. T., Martins, J. R. R. A., Moore, K. T., & Naylor, B. A. (2019). OpenMDAO: An open-source framework for multidisciplinary design, analysis, and optimization. Structural and Multidisciplinary Optimization, 59(4), 1075–1104. https://doi.org/10.1007/s00158-019-02211-z</unstructured_citation> | ||
| </citation> | ||
| <citation key="Li:2005"> | ||
| <article_title>Parallelizing particle swarm optimization</article_title> | ||
| <author>Li</author> | ||
| <journal_title>PACRIM. 2005 IEEE pacific rim conference on communications, computers and signal processing, 2005.</journal_title> | ||
| <doi>10.1109/PACRIM.2005.1517282</doi> | ||
| <cYear>2005</cYear> | ||
| <unstructured_citation>Li, B., & Wada, K. (2005). Parallelizing particle swarm optimization. PACRIM. 2005 IEEE Pacific Rim Conference on Communications, Computers and Signal Processing, 2005., 288–291. https://doi.org/10.1109/PACRIM.2005.1517282</unstructured_citation> | ||
| </citation> | ||
| <citation key="Blank:2020"> | ||
| <article_title>Pymoo: Multi-objective optimization in Python</article_title> | ||
| <author>Blank</author> | ||
| <journal_title>IEEE Access</journal_title> | ||
| <volume>8</volume> | ||
| <doi>10.1109/access.2020.2990567</doi> | ||
| <cYear>2020</cYear> | ||
| <unstructured_citation>Blank, J., & Deb, K. (2020). Pymoo: Multi-objective optimization in Python. IEEE Access, 8, 89497–89509. https://doi.org/10.1109/access.2020.2990567</unstructured_citation> | ||
| </citation> | ||
| </citation_list> | ||
| </journal_article> | ||
| </journal> | ||
| </body> | ||
| </doi_batch> |
Binary file not shown.
Oops, something went wrong.