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| <given_name>Chung-You</given_name> | ||
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| <citation key="shih2021reprogrammable"> | ||
| <article_title>Reprogrammable and high-precision holographic optical addressing of trapped ions for scalable quantum control</article_title> | ||
| <author>Shih</author> | ||
| <journal_title>npj Quantum Information</journal_title> | ||
| <issue>1</issue> | ||
| <volume>7</volume> | ||
| <doi>10.1038/s41534-021-00396-0</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Shih, C.-Y., Motlakunta, S., Kotibhaskar, N., Sajjan, M., Hablützel, R., & Islam, R. (2021). Reprogrammable and high-precision holographic optical addressing of trapped ions for scalable quantum control. Npj Quantum Information, 7(1), 57. https://doi.org/10.1038/s41534-021-00396-0</unstructured_citation> | ||
| </citation> | ||
| <citation key="zupancic2016ultra"> | ||
| <article_title>Ultra-precise holographic beam shaping for microscopic quantum control</article_title> | ||
| <author>Zupancic</author> | ||
| <journal_title>Optics express</journal_title> | ||
| <issue>13</issue> | ||
| <volume>24</volume> | ||
| <doi>10.1364/OE.24.013881</doi> | ||
| <cYear>2016</cYear> | ||
| <unstructured_citation>Zupancic, P., Preiss, P. M., Ma, R., Lukin, A., Tai, M. E., Rispoli, M., Islam, R., & Greiner, M. (2016). Ultra-precise holographic beam shaping for microscopic quantum control. Optics Express, 24(13), 13881–13893. https://doi.org/10.1364/OE.24.013881</unstructured_citation> | ||
| </citation> | ||
| <citation key="lee1978iii"> | ||
| <article_title>III computer-generated holograms: Techniques and applications</article_title> | ||
| <author>Lee</author> | ||
| <journal_title>Progress in optics</journal_title> | ||
| <volume>16</volume> | ||
| <doi>10.1016/S0079-6638(08)70072-6</doi> | ||
| <cYear>1978</cYear> | ||
| <unstructured_citation>Lee, W.-H. (1978). III computer-generated holograms: Techniques and applications. In Progress in optics (Vol. 16, pp. 119–232). Elsevier. https://doi.org/10.1016/S0079-6638(08)70072-6</unstructured_citation> | ||
| </citation> | ||
| <citation key="gerhberg1972practical"> | ||
| <article_title>A practical algorithm for the determination of phase from image and diffraction plane picture</article_title> | ||
| <author>Gerhberg</author> | ||
| <journal_title>Optik</journal_title> | ||
| <volume>35</volume> | ||
| <cYear>1972</cYear> | ||
| <unstructured_citation>Gerhberg, R., & Saxton, W. (1972). A practical algorithm for the determination of phase from image and diffraction plane picture. Optik, 35, 237–246. https://web.archive.org/web/20220505015731/http://www.u.arizona.edu/~ppoon/GerchbergandSaxton1972.pdf</unstructured_citation> | ||
| </citation> | ||
| <citation key="sebastien_m_popoff_2022_6121191"> | ||
| <article_title>Wavefrontshaping/ALP4lib: 1.0.1</article_title> | ||
| <author>Popoff</author> | ||
| <doi>10.5281/zenodo.6121191</doi> | ||
| <cYear>2022</cYear> | ||
| <unstructured_citation>Popoff, S. M., Shih, G., B., D., & GustavePariente. (2022). Wavefrontshaping/ALP4lib: 1.0.1 (Version 1.0.1). Zenodo. https://doi.org/10.5281/zenodo.6121191</unstructured_citation> | ||
| </citation> | ||
| <citation key="gaunt2012robust"> | ||
| <article_title>Robust digital holography for ultracold atom trapping</article_title> | ||
| <author>Gaunt</author> | ||
| <journal_title>Scientific reports</journal_title> | ||
| <issue>1</issue> | ||
| <volume>2</volume> | ||
| <doi>10.1038/srep00721</doi> | ||
| <cYear>2012</cYear> | ||
| <unstructured_citation>Gaunt, A. L., & Hadzibabic, Z. (2012). Robust digital holography for ultracold atom trapping. Scientific Reports, 2(1), 721. https://doi.org/10.1038/srep00721</unstructured_citation> | ||
| </citation> | ||
| <citation key="qian2021super"> | ||
| <article_title>Super-resolved imaging of a single cold atom on a nanosecond timescale</article_title> | ||
| <author>Qian</author> | ||
| <journal_title>Physical review letters</journal_title> | ||
| <issue>26</issue> | ||
| <volume>127</volume> | ||
| <doi>10.1103/PhysRevLett.127.263603</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Qian, Z.-H., Cui, J.-M., Luo, X.-W., Zheng, Y.-X., Huang, Y.-F., Ai, M.-Z., He, R., Li, C.-F., & Guo, G.-C. (2021). Super-resolved imaging of a single cold atom on a nanosecond timescale. Physical Review Letters, 127(26), 263603. https://doi.org/10.1103/PhysRevLett.127.263603</unstructured_citation> | ||
| </citation> | ||
| <citation key="drechsler2021optical"> | ||
| <article_title>Optical superresolution sensing of a trapped ion’s wave packet size</article_title> | ||
| <author>Drechsler</author> | ||
| <journal_title>Physical Review Letters</journal_title> | ||
| <issue>14</issue> | ||
| <volume>127</volume> | ||
| <doi>10.1103/PhysRevLett.127.143602</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Drechsler, M., Wolf, S., Schmiegelow, C. T., & Schmidt-Kaler, F. (2021). Optical superresolution sensing of a trapped ion’s wave packet size. Physical Review Letters, 127(14), 143602. https://doi.org/10.1103/PhysRevLett.127.143602</unstructured_citation> | ||
| </citation> | ||
| <citation key="kotibhaskar2023programmable"> | ||
| <article_title>Programmable XY-type couplings through parallel spin-dependent forces on the same trapped ion motional modes</article_title> | ||
| <author>Kotibhaskar</author> | ||
| <journal_title>arXiv preprint arXiv:2307.04922</journal_title> | ||
| <doi>10.1103/PhysRevResearch.6.033038</doi> | ||
| <cYear>2023</cYear> | ||
| <unstructured_citation>Kotibhaskar, N., Shih, C.-Y., Motlakunta, S., Vogliano, A., Hahn, L., Chen, Y.-T., & Islam, R. (2023). Programmable XY-type couplings through parallel spin-dependent forces on the same trapped ion motional modes. arXiv Preprint arXiv:2307.04922. https://doi.org/10.1103/PhysRevResearch.6.033038</unstructured_citation> | ||
| </citation> | ||
| <citation key="andersen2006quantized"> | ||
| <article_title>Quantized rotation of atoms from photons with orbital angular momentum</article_title> | ||
| <author>Andersen</author> | ||
| <journal_title>Physical review letters</journal_title> | ||
| <issue>17</issue> | ||
| <volume>97</volume> | ||
| <doi>10.1103/PhysRevLett.97.170406</doi> | ||
| <cYear>2006</cYear> | ||
| <unstructured_citation>Andersen, M., Ryu, C., Cladé, P., Natarajan, V., Vaziri, A., Helmerson, K., & Phillips, W. D. (2006). Quantized rotation of atoms from photons with orbital angular momentum. Physical Review Letters, 97(17), 170406. https://doi.org/10.1103/PhysRevLett.97.170406</unstructured_citation> | ||
| </citation> | ||
| <citation key="kuga1997novel"> | ||
| <article_title>Novel optical trap of atoms with a doughnut beam</article_title> | ||
| <author>Kuga</author> | ||
| <journal_title>Physical Review Letters</journal_title> | ||
| <issue>25</issue> | ||
| <volume>78</volume> | ||
| <doi>10.1103/PhysRevLett.78.4713</doi> | ||
| <cYear>1997</cYear> | ||
| <unstructured_citation>Kuga, T., Torii, Y., Shiokawa, N., Hirano, T., Shimizu, Y., & Sasada, H. (1997). Novel optical trap of atoms with a doughnut beam. Physical Review Letters, 78(25), 4713. https://doi.org/10.1103/PhysRevLett.78.4713</unstructured_citation> | ||
| </citation> | ||
| <citation key="obata2010multi"> | ||
| <article_title>Multi-focus two-photon polymerization technique based on individually controlled phase modulation</article_title> | ||
| <author>Obata</author> | ||
| <journal_title>Optics express</journal_title> | ||
| <issue>16</issue> | ||
| <volume>18</volume> | ||
| <doi>10.1364/OE.18.017193</doi> | ||
| <cYear>2010</cYear> | ||
| <unstructured_citation>Obata, K., Koch, J., Hinze, U., & Chichkov, B. N. (2010). Multi-focus two-photon polymerization technique based on individually controlled phase modulation. Optics Express, 18(16), 17193–17200. https://doi.org/10.1364/OE.18.017193</unstructured_citation> | ||
| </citation> | ||
| <citation key="islam2015measuring"> | ||
| <article_title>Measuring entanglement entropy in a quantum many-body system</article_title> | ||
| <author>Islam</author> | ||
| <journal_title>Nature</journal_title> | ||
| <issue>7580</issue> | ||
| <volume>528</volume> | ||
| <doi>10.1038/nature15750</doi> | ||
| <cYear>2015</cYear> | ||
| <unstructured_citation>Islam, R., Ma, R., Preiss, P. M., Eric Tai, M., Lukin, A., Rispoli, M., & Greiner, M. (2015). Measuring entanglement entropy in a quantum many-body system. Nature, 528(7580), 77–83. https://doi.org/10.1038/nature15750</unstructured_citation> | ||
| </citation> | ||
| <citation key="shack1971production"> | ||
| <article_title>Production and use of a lenticular hartmann screen</article_title> | ||
| <author>Shack</author> | ||
| <journal_title>Spring meeting of optical society of america, 1971</journal_title> | ||
| <volume>656</volume> | ||
| <doi>10.1364/JOSA.61.000648</doi> | ||
| <cYear>1971</cYear> | ||
| <unstructured_citation>Shack, R. V. (1971). Production and use of a lenticular hartmann screen. Spring Meeting of Optical Society of America, 1971, 656. https://doi.org/10.1364/JOSA.61.000648</unstructured_citation> | ||
| </citation> | ||
| <citation key="Paschottashack_hartmann_wavefront_sensors"> | ||
| <article_title>Shack–hartmann wavefront sensors</article_title> | ||
| <author>Paschotta</author> | ||
| <doi>10.61835/jcv</doi> | ||
| <unstructured_citation>Paschotta, R. Shack–hartmann wavefront sensors. RP Photonics Encyclopedia; RP Photonics AG. https://doi.org/10.61835/jcv</unstructured_citation> | ||
| </citation> | ||
| <citation key="cupy_learningsys2017"> | ||
| <article_title>CuPy: A NumPy-compatible library for NVIDIA GPU calculations</article_title> | ||
| <author>Okuta</author> | ||
| <journal_title>Proceedings of workshop on machine learning systems (LearningSys) in the thirty-first annual conference on neural information processing systems (NIPS)</journal_title> | ||
| <cYear>2017</cYear> | ||
| <unstructured_citation>Okuta, R., Unno, Y., Nishino, D., Hido, S., & Loomis, C. (2017). CuPy: A NumPy-compatible library for NVIDIA GPU calculations. Proceedings of Workshop on Machine Learning Systems (LearningSys) in the Thirty-First Annual Conference on Neural Information Processing Systems (NIPS). http://learningsys.org/nips17/assets/papers/paper_16.pdf</unstructured_citation> | ||
| </citation> | ||
| <citation key="yamamoto2021gradient"> | ||
| <article_title>Gradient-based optimization of time-multiplexed binary computer-generated holograms by digital mirror device</article_title> | ||
| <author>Yamamoto</author> | ||
| <journal_title>Digital holography and three-dimensional imaging</journal_title> | ||
| <doi>10.1364/DH.2021.DTh7C.1</doi> | ||
| <cYear>2021</cYear> | ||
| <unstructured_citation>Yamamoto, K., & Ochiai, Y. (2021). Gradient-based optimization of time-multiplexed binary computer-generated holograms by digital mirror device. Digital Holography and Three-Dimensional Imaging, DTh7C–1. https://doi.org/10.1364/DH.2021.DTh7C.1</unstructured_citation> | ||
| </citation> | ||
| <citation key="matthes2019optical"> | ||
| <article_title>Optical complex media as universal reconfigurable linear operators</article_title> | ||
| <author>Matthès</author> | ||
| <journal_title>Optica</journal_title> | ||
| <issue>4</issue> | ||
| <volume>6</volume> | ||
| <doi>10.1364/OPTICA.6.000465</doi> | ||
| <cYear>2019</cYear> | ||
| <unstructured_citation>Matthès, M. W., Del Hougne, P., De Rosny, J., Lerosey, G., & Popoff, S. M. (2019). Optical complex media as universal reconfigurable linear operators. Optica, 6(4), 465–472. https://doi.org/10.1364/OPTICA.6.000465</unstructured_citation> | ||
| </citation> | ||
| <citation key="pasienski2008high"> | ||
| <article_title>A high-accuracy algorithm for designing arbitrary holographic atom traps</article_title> | ||
| <author>Pasienski</author> | ||
| <journal_title>Optics express</journal_title> | ||
| <issue>3</issue> | ||
| <volume>16</volume> | ||
| <doi>10.1364/OE.16.002176</doi> | ||
| <cYear>2008</cYear> | ||
| <unstructured_citation>Pasienski, M., & DeMarco, B. (2008). A high-accuracy algorithm for designing arbitrary holographic atom traps. Optics Express, 16(3), 2176–2190. https://doi.org/10.1364/OE.16.002176</unstructured_citation> | ||
| </citation> | ||
| <citation key="motlakunta2024"> | ||
| <article_title>Preserving a qubit during state-destroying operations on an adjacent qubit at a few micrometers distance</article_title> | ||
| <author>Motlakunta</author> | ||
| <journal_title>Nature Communications</journal_title> | ||
| <issue>1</issue> | ||
| <volume>15</volume> | ||
| <doi>10.1038/s41467-024-50864-2</doi> | ||
| <issn>2041-1723</issn> | ||
| <cYear>2024</cYear> | ||
| <unstructured_citation>Motlakunta, S., Kotibhaskar, N., Shih, C.-Y., Vogliano, A., McLaren, D., Hahn, L., Zhu, J., Hablützel, R., & Islam, R. (2024). Preserving a qubit during state-destroying operations on an adjacent qubit at a few micrometers distance. Nature Communications, 15(1), 6575. https://doi.org/10.1038/s41467-024-50864-2</unstructured_citation> | ||
| </citation> | ||
| <citation key="tensorflow_developers_2024_13989084"> | ||
| <article_title>TensorFlow</article_title> | ||
| <author>TensorFlow Developers</author> | ||
| <doi>10.5281/zenodo.13989084</doi> | ||
| <cYear>2024</cYear> | ||
| <unstructured_citation>TensorFlow Developers. (2024). TensorFlow (Version v2.18.0). Zenodo. https://doi.org/10.5281/zenodo.13989084</unstructured_citation> | ||
| </citation> | ||
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