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mccalluc committed Nov 7, 2024
2 parents 1247392 + 26a3115 commit 34e1170
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Showing 9 changed files with 64 additions and 35 deletions.
4 changes: 4 additions & 0 deletions WHAT-WE-LEARNED.md
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Expand Up @@ -74,3 +74,7 @@ The maturity of Shiny for R means that the vast majority of the examples are for
## More validation / type casting on inputs

If we we imagine we have a field that is a required positive integer, it would be nice to be able to specify that in the input itself, with a default error message handled by the UI, instead of needing to set up a calc on our side.

## Shiny docs could have better formatting

- https://shiny.posit.co/py/api/core/ui.layout_columns.html: bullet list not rendered correctly.
64 changes: 40 additions & 24 deletions dp_creator_ii/app/components/column_module.py
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Expand Up @@ -13,30 +13,46 @@

@module.ui
def column_ui(): # pragma: no cover
return [
# The default values on these inputs
# should be overridden by the reactive.effect.
ui.input_numeric("min", "Min", 0),
ui.input_numeric("max", "Max", 0),
ui.input_numeric("bins", "Bins", 0),
ui.input_select(
"weight",
"Weight",
choices={
1: "Less accurate",
default_weight: "Default",
4: "More accurate",
},
selected=1,
),
output_code_sample("Column Definition", "column_code"),
ui.markdown(
"This simulation assumes a normal distribution "
"between the specified min and max. "
"Your data file has not been read except to determine the columns."
),
ui.output_plot("column_plot"),
]
width = "10em" # Just wide enough so the text isn't trucated.
return ui.layout_columns(
[
# The default values on these inputs
# should be overridden by the reactive.effect.
ui.input_numeric("min", "Min", 0, width=width),
ui.input_numeric("max", "Max", 0, width=width),
ui.input_numeric("bins", "Bins", 0, width=width),
ui.input_select(
"weight",
"Weight",
choices={
1: "Less accurate",
default_weight: "Default",
4: "More accurate",
},
selected=default_weight,
width=width,
),
],
[
# TODO: This doesn't need to be repeated: could just go once at the top.
# https://github.com/opendp/dp-creator-ii/issues/138
ui.markdown(
"This simulation assumes a normal distribution "
"between the specified min and max. "
"Your data file has not been read except to determine the columns."
),
ui.output_plot("column_plot", height="300px"),
# Make plot smaller than default: about the same size as the other column.
output_code_sample("Column Definition", "column_code"),
],
col_widths={
# Controls stay roughly a constant width;
# Graph expands to fill space.
"sm": (4, 8),
"md": (3, 9),
"lg": (2, 10),
},
)


@module.server
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10 changes: 8 additions & 2 deletions dp_creator_ii/app/components/plots.py
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Expand Up @@ -15,9 +15,15 @@ def _df_to_columns(df):


def plot_histogram(histogram_df, error, cutoff): # pragma: no cover
labels, values = _df_to_columns(histogram_df)
bins, values = _df_to_columns(histogram_df)
mod = (len(bins) // 12) + 1
majors = [label for i, label in enumerate(bins) if i % mod == 0]
minors = [label for i, label in enumerate(bins) if i % mod != 0]
_figure, axes = plt.subplots()
bar_colors = ["blue" if v > cutoff else "lightblue" for v in values]
axes.bar(labels, values, color=bar_colors, yerr=error)
axes.bar(bins, values, color=bar_colors, yerr=error)
axes.set_xticks(majors, majors)
axes.set_xticks(minors, ["" for _ in minors], minor=True)
axes.axhline(cutoff, color="lightgrey", zorder=-1)
axes.set_ylim(bottom=0)
# TODO: Since this seems to return None, how does the information flow?
2 changes: 1 addition & 1 deletion dp_creator_ii/app/css/styles.css
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@@ -1,5 +1,5 @@
body {
margin: 1em;
margin: 2em;
}

#top_level_nav {
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Expand Up @@ -6,6 +6,9 @@
from dp_creator_ii.utils.argparse_helpers import _get_arg_parser, _existing_csv_type


fixtures_path = Path(__file__).parent.parent / "fixtures"


def test_help():
help = (
_get_arg_parser()
Expand All @@ -19,7 +22,7 @@ def test_help():
)
print(help)

readme_md = (Path(__file__).parent.parent / "README.md").read_text()
readme_md = (Path(__file__).parent.parent.parent / "README.md").read_text()
assert help in readme_md


Expand All @@ -30,9 +33,9 @@ def test_arg_validation_no_file():

def test_arg_validation_not_csv():
with pytest.raises(ArgumentTypeError, match='Must have ".csv" extension:'):
_existing_csv_type(Path(__file__).parent / "fixtures" / "fake.ipynb")
_existing_csv_type(fixtures_path / "fake.ipynb")


def test_arg_validation_works():
path = _existing_csv_type(Path(__file__).parent / "fixtures" / "fake.csv")
path = _existing_csv_type(fixtures_path / "fake.csv")
assert path.name == "fake.csv"
5 changes: 3 additions & 2 deletions tests/test_converters.py → tests/utils/test_converters.py
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Expand Up @@ -5,6 +5,9 @@
from dp_creator_ii.utils.converters import convert_py_to_nb


fixtures_path = Path(__file__).parent.parent / "fixtures"


def norm_nb(nb_str):
normed_nb_str = nb_str
normed_nb_str = re.sub(r'"id": "[^"]+"', '"id": "12345678"', normed_nb_str)
Expand All @@ -21,7 +24,6 @@ def norm_nb(nb_str):


def test_convert_py_to_nb():
fixtures_path = Path(__file__).parent / "fixtures"
python_str = (fixtures_path / "fake.py").read_text()
actual_nb_str = convert_py_to_nb(python_str)
expected_nb_str = (fixtures_path / "fake.ipynb").read_text()
Expand All @@ -32,7 +34,6 @@ def test_convert_py_to_nb():


def test_convert_py_to_nb_execute():
fixtures_path = Path(__file__).parent / "fixtures"
python_str = (fixtures_path / "fake.py").read_text()
actual_nb_str = convert_py_to_nb(python_str, execute=True)
expected_nb_str = (fixtures_path / "fake-executed.ipynb").read_text()
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File renamed without changes.
5 changes: 2 additions & 3 deletions tests/test_template.py → tests/utils/test_templates.py
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Expand Up @@ -7,6 +7,7 @@
from dp_creator_ii.utils.templates import _Template, make_notebook_py, make_script_py


fixtures_path = Path(__file__).parent.parent / "fixtures"
fake_csv = "tests/fixtures/fake.csv"


Expand Down Expand Up @@ -113,9 +114,7 @@ def clear_empty_lines(text):
# Cleanup whitespace after indenting blocks
return re.sub(r"^\s+$", "", text, flags=re.MULTILINE).strip()

expected_script = (
Path(__file__).parent / "fixtures" / "expected-script.py"
).read_text()
expected_script = (fixtures_path / "expected-script.py").read_text()
assert clear_empty_lines(script) == clear_empty_lines(expected_script)

with NamedTemporaryFile(mode="w") as fp:
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