Erosion and Accretion of carbonate blocks

Dependencies

The following R packages are required:

• tidyverse
• validate
• skimr
• styler
• dagitty

Installation

1. Start by cloning the repository to a directory of your choice

git clone [email protected]:open-AIMS/carbonate_blocks.git .
OR
git clone https://github.com/open-AIMS/carbonate_blocks.git .

2. Establish a data/raw/ folder and place a copy of the raw data (as show below)

\
|- README.md
|- data
|  |- raw
|     |- Blocks_eReefs_silt_biota_erosion_metab_2024Oct.csv
|- R
|  |- 00_main.R

3. Navigate to the R folder and run the 00_main.R script

Outputs

Early on, the scripts will expand on the directory structure to create the following:

\
|- README.md
|- data
|  |- raw
|  |  |- Blocks_eReefs_silt_biota_erosion_metab_2024Oct.csv
|  |- primary
|  |- processed
|  |- modelled
|- R
|  |- 00_main.R
|- outputs
|  |- figures
|  |- tables
|

Important global variables

• DATA_PATH: path to root of data folder
• RAW_DATA_PATH: path to location of raw data (data supplied by Katharina)
• FIGURES_PATH: path to location of all output figures
• TABLES_PATH: path to location of all output tables