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okunator committed Jul 5, 2024
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## What's new? 📢
- Now you can use any pre-trained image encoder from the [timm](https://github.com/huggingface/pytorch-image-models) library as the model backbone. (Given that they implement the `forward_intermediates` method, most of them do).
- New example notebooks showing how to finetune **Cellpose** and **Stardist** with the new *state-of-the-art* foundation model backbones: [*UNI*](https://www.nature.com/articles/s41591-024-02857-3#Sec13) from the [MahmoodLab](https://faisal.ai/), and [Prov-GigaPath](https://www.nature.com/articles/s41586-024-07441-w) from Microsoft Research. Check out the notebooks [here (UNI)](https://github.com/okunator/cellseg_models.pytorch/blob/main/examples/pannuke_nuclei_segmentation_cellpose_UNI.ipynb), and [here (Prov-GigaPath)](https://github.com/okunator/cellseg_models.pytorch/blob/main/examples/pannuke_nuclei_segmentation_stardist_provgigapath.ipynb).
- **NOTE!**: **These foundation models are licensed under restrictive licences and you need to agree to the terms of any of the said models to get access to the weights. Once you have been granted acces, you can run the above notebooks**. You can request for access here: [the model pages UNI](https://huggingface.co/MahmoodLab/UNI) and [model pages Prov-GigaPath](https://huggingface.co/prov-gigapath/prov-gigapath). These models may only be used for non-commercial, academic research purposes with proper attribution. **Be sure that you have read and understood the terms before requesting access**.
- **NOTE!**: **These foundation models are licensed under restrictive licences and you need to agree to the terms of any of the said models to get access to the weights. Once you have been granted access, you can run the above notebooks**. You can request for access here: [the model pages UNI](https://huggingface.co/MahmoodLab/UNI) and [model pages Prov-GigaPath](https://huggingface.co/prov-gigapath/prov-gigapath). These models may only be used for non-commercial, academic research purposes with proper attribution. **Be sure that you have read and understood the terms before requesting access**.

## Features 🌟

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