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Add comments and clean up debug statements #449

Add comments and clean up debug statements

Add comments and clean up debug statements #449

# Workflow for running the TES compliance suite against Funnel
#
# This includes the following steps:
# 1. Build Funnel and store the resulting binary artifact
# 2. Install tes-compliance-suite and run against every version of TES simultaneously
# 3. start-report-deployment: Send a dispatch to the funnel-compliance repository to generate and publish
# the tes-compliance-suite report to https://ohsu-comp-bio.github.io/funnel-compliance/
#
# Optionally debug via SSH
# Ref: https://fleetdm.com/engineering/tips-for-github-actions-usability
#
# To use this step uncomment and place anywhere in the build steps. The build will pause on this step and
# output a ssh address associated with the Github action worker. Helpful for debugging build steps and
# and intermediary files/artifacts.
#
# - name: "Debug: Package dependancies for tmate (CentOS)"
# run: |
# yum install -y xz
# ln -s /bin/true /bin/apt-get
#
# - name: Setup tmate session
# uses: mxschmitt/action-tmate@v3
name: Compliance Test
on:
push:
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Set up Go 1.x
uses: actions/setup-go@v5
with:
go-version: 1.21
- name: Check out code
uses: actions/checkout@v2
- name: Build
run: make build
- name: Store funnel
uses: actions/upload-artifact@v2
with:
name: funnelBin
path: funnel
compliance:
strategy:
fail-fast: false
matrix:
version: [1.0.0, 1.1.0]
db: ["boltdb", "mongodb"]
compute: ["local"]
needs: build
runs-on: ubuntu-latest
steps:
# Required to access the 'tests/mongo.config.yml' file
# Perhaps uploading it as an artifact would be more efficient?
- name: Check out code
uses: actions/checkout@v2
- uses: actions/download-artifact@v3
with:
name: funnelBin
- name: Start Funnel server
run: |
touch config.yml
if [ ${{ matrix.db }} = "mongodb" ]; then
make start-mongodb
cat `pwd`/tests/mongo.config.yml >> config.yml
fi
chmod +x funnel
./funnel server run --config `pwd`/config.yml &> funnel.logs &
- name: Run OpenAPI Test Runner
run: |
git clone https://github.com/elixir-cloud-aai/openapi-test-runner
cd openapi-test-runner
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt
python setup.py install
openapi-test-runner report --version "${{ matrix.version }}" --server "http://localhost:8000/"