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Document each of the Conda environment files #1932

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e586501
Switch to using the array_pkg fixture
dagardner-nv Sep 5, 2024
f859ca0
Lint fixes
dagardner-nv Sep 5, 2024
bc6ac3d
Add a few vocabulary entries
dagardner-nv Sep 6, 2024
e898922
WIP
dagardner-nv Sep 6, 2024
16930df
WIP
dagardner-nv Sep 6, 2024
68c5f83
Passthru stage should support GPU & CPU modes
dagardner-nv Sep 6, 2024
4f92ccb
First pass at updating AppShieldSourceStage to emit ControlMessages
dagardner-nv Sep 6, 2024
1bc26a0
update tests
dagardner-nv Sep 6, 2024
0b4b7ba
WIP
dagardner-nv Sep 6, 2024
76c16ce
Set the http port to be the default since we are running in C++ mode
dagardner-nv Sep 9, 2024
a16bc90
Fix spelling error
dagardner-nv Sep 9, 2024
be15217
Remove final decorator as this conflicts with using the preallocator …
dagardner-nv Sep 9, 2024
36b0190
Deprecate AppShieldMessageMeta
dagardner-nv Sep 9, 2024
5bd82f2
Explicitly convert source dataframes to cudf
dagardner-nv Sep 9, 2024
9835e5f
Refactor to use control messages, and limit pandas<->cudf conversions
dagardner-nv Sep 9, 2024
2ad1c99
wip
dagardner-nv Sep 10, 2024
8d2f424
Use PreallocatorMixin in create features since its emitting new dataf…
dagardner-nv Sep 10, 2024
206bc4e
Use C++ mode
dagardner-nv Sep 10, 2024
45291ea
Relocate test and update
dagardner-nv Sep 10, 2024
cf4aa84
Update tests
dagardner-nv Sep 10, 2024
fc9e66b
Config.freeze enforces a compatible value for CppConfig on the first …
dagardner-nv Sep 10, 2024
f6d5513
Ensure the empty config created for boundary stages have a matching e…
dagardner-nv Sep 10, 2024
45dc802
Boundary stages should support CPU mode
dagardner-nv Sep 10, 2024
ca81a8d
Remove setting CppConfig as the Config class does this now
dagardner-nv Sep 10, 2024
89e2add
Add type hints
dagardner-nv Sep 10, 2024
51b4833
First pass at deprecating UserMessageMeta and updating AutoencoderSou…
dagardner-nv Sep 10, 2024
3370623
AppShieldSourceStage should support both cpu and gpu modes
dagardner-nv Sep 10, 2024
8baf123
Cleanup comments
dagardner-nv Sep 10, 2024
8bf6bc4
Update TrainAE to accept incoming ControlMessages
dagardner-nv Sep 10, 2024
58ab86e
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 10, 2024
2949820
typehint cleanups
dagardner-nv Sep 10, 2024
642dcd9
Fix type-o in exception string
dagardner-nv Sep 10, 2024
e3b3f86
Minor type hint cleanups
dagardner-nv Sep 10, 2024
ac8ef0d
Replace abstractmethod decorators with NotImplementedError exceptions…
dagardner-nv Sep 10, 2024
630adf9
Add CPU support
dagardner-nv Sep 10, 2024
7c010ca
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 11, 2024
0853542
WIP
dagardner-nv Sep 11, 2024
7852184
Fix merge error
dagardner-nv Sep 11, 2024
88c08fe
merge cleanups
dagardner-nv Sep 11, 2024
25df4e1
merge cleanups
dagardner-nv Sep 11, 2024
d6beeaf
merge cleanups
dagardner-nv Sep 11, 2024
f12b564
merge cleanups
dagardner-nv Sep 11, 2024
021189f
WIP
dagardner-nv Sep 11, 2024
100e3ae
Fix broken tests
dagardner-nv Sep 11, 2024
5628e48
Fix tests
dagardner-nv Sep 11, 2024
2d3a0d0
Fix broken test
dagardner-nv Sep 11, 2024
6a6f5eb
AE pipelines no longer need Python mode
dagardner-nv Sep 11, 2024
a001440
Enable AE tests
dagardner-nv Sep 11, 2024
aff5dc8
Fix AE tests
dagardner-nv Sep 11, 2024
bf28221
Remove redundant xfail
dagardner-nv Sep 11, 2024
832b8d0
Remove broken test, because it lives inside a directory named 'dfenco…
dagardner-nv Sep 11, 2024
25c8b88
Enable gnn tests - not currently passing
dagardner-nv Sep 11, 2024
b7f0ab6
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 16, 2024
b63bd87
WIP
dagardner-nv Sep 16, 2024
8ed491a
Set pipeline to run in GPU mode
dagardner-nv Sep 16, 2024
6a837af
Fix mode marker
dagardner-nv Sep 16, 2024
364fb62
Remove unused import
dagardner-nv Sep 16, 2024
faab0c5
WIP
dagardner-nv Sep 16, 2024
1a5f027
First pass at replacing DFPMessageMeta with MessageMeta+ControlMessage
dagardner-nv Sep 16, 2024
f18a81e
Set DFP pipelines to run in GPU mode
dagardner-nv Sep 17, 2024
b83f342
fix dfp_training
yczhang-nv Sep 17, 2024
c3b3012
Merge branch 'fix-dfp-example-error' of github.com:yczhang-nv/Morpheu…
dagardner-nv Sep 17, 2024
169639d
Updating DFP tests
dagardner-nv Sep 17, 2024
b0c65e1
Refactor to avoid costly list comprehension
dagardner-nv Sep 17, 2024
7b01c2f
Fix test
dagardner-nv Sep 17, 2024
e8600d5
Fix test
dagardner-nv Sep 17, 2024
511dbdb
Move timezone truncation from the TrainAEStage to AutoencoderSourceStage
dagardner-nv Sep 17, 2024
c7cf687
Fix dfp tests
dagardner-nv Sep 17, 2024
379457e
Remove message_type
dagardner-nv Sep 17, 2024
53cbbef
Lint cleanups
dagardner-nv Sep 17, 2024
56ac198
WIP
dagardner-nv Sep 17, 2024
073cac1
Lint fixes
dagardner-nv Sep 17, 2024
64ab1a7
lint fixes
dagardner-nv Sep 17, 2024
acbd057
Disable the too-many-ancestors check
dagardner-nv Sep 17, 2024
db57b0f
disably cyclic check for control message
dagardner-nv Sep 17, 2024
0730407
Use 'pandas' instead of 'Pandas'
dagardner-nv Sep 18, 2024
547db64
Fix? Can't find 'action.yml' error
dagardner-nv Sep 18, 2024
2d780bb
Fix? Can't find 'action.yml' error
dagardner-nv Sep 18, 2024
e22b01a
Fix? Can't find 'action.yml' error
dagardner-nv Sep 18, 2024
66baad0
Fix? Can't find 'action.yml' error
dagardner-nv Sep 18, 2024
822c2fb
Fix? Can't find 'action.yml' error
dagardner-nv Sep 18, 2024
ba38528
Cleanups
dagardner-nv Sep 18, 2024
90792c6
Add cpu only support for testing the release container
dagardner-nv Sep 18, 2024
e779d76
Fix type-o in variable name, remove warning log
dagardner-nv Sep 18, 2024
c50c717
Warn users regarding the use of the --use_cpp flag
dagardner-nv Sep 18, 2024
c20a956
Change default triton port to the one used by the C++ impl
dagardner-nv Sep 18, 2024
3b8a0d4
Support CPU only mode in WriteToRabbitMQStage, add --use_cpu_only fla…
dagardner-nv Sep 18, 2024
e6d1935
write_simple.py now requires MORPHEUS_ROOT
dagardner-nv Sep 18, 2024
1fb03a4
Update code snippets to match source code changes
dagardner-nv Sep 18, 2024
b6ce583
Update python impls to match those from the 2_2 example
dagardner-nv Sep 18, 2024
d740423
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 18, 2024
6fad250
Convert to pandas prior to invoking the model
dagardner-nv Sep 18, 2024
877ae49
Set columns file to be package relative, fix the probs type
dagardner-nv Sep 18, 2024
23c34c9
Update help output, remove usage of --use_cpp=False, use package rela…
dagardner-nv Sep 18, 2024
2095ebd
Change default triton port as we will only be using the C++ impl
dagardner-nv Sep 18, 2024
c87173d
Fix inferring the dataframe type
dagardner-nv Sep 18, 2024
60b0fb2
Fix inferring the dataframe type
dagardner-nv Sep 18, 2024
a22ccc9
Use the default port of the c++ triton impl
dagardner-nv Sep 18, 2024
d3eec63
Use triton http port as this is used by the C++ impl, fix path to voc…
dagardner-nv Sep 18, 2024
e224ab9
Remove unused imports
dagardner-nv Sep 18, 2024
b47ef47
update read_simple and write_simple scripts
dagardner-nv Sep 18, 2024
f70787b
Mark the LLMEngineStage as supporting CPU & GPU execution modes
dagardner-nv Sep 19, 2024
51ab625
Add type hint
dagardner-nv Sep 19, 2024
5bcd44d
Revert "Add type hint"
dagardner-nv Sep 19, 2024
cf17c9f
Revert "Mark the LLMEngineStage as supporting CPU & GPU execution modes"
dagardner-nv Sep 19, 2024
1f43837
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 19, 2024
0539c06
Revert "Revert "Mark the LLMEngineStage as supporting CPU & GPU execu…
dagardner-nv Sep 19, 2024
5a063c2
Revert "Revert "Add type hint""
dagardner-nv Sep 19, 2024
11f58ea
WIP: not working
dagardner-nv Sep 19, 2024
3632e80
Add work-around for issue #1891
dagardner-nv Sep 23, 2024
0a9d48c
Expose thread_count as a constructor parameter to TritonInferenceStag…
dagardner-nv Sep 23, 2024
e4f0117
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Sep 23, 2024
f8d2f81
Revert WIP changes
dagardner-nv Sep 23, 2024
203c56d
WIP - untested
dagardner-nv Sep 23, 2024
93597d9
Fix casting of control messages
dagardner-nv Sep 23, 2024
aec27d2
Add CPU only mode support to the simple agents pipeline
dagardner-nv Sep 23, 2024
1d811c8
Remove unused import
dagardner-nv Sep 23, 2024
4646eb2
update tests to set the payload in the metadata
dagardner-nv Sep 23, 2024
6a23f79
Fix conda path for missing llm packages
dagardner-nv Sep 23, 2024
24e41b5
Merge branch 'branch-24.10' into david-cpu-only-llm
dagardner-nv Sep 24, 2024
a64de2c
wip
dagardner-nv Sep 25, 2024
19f432d
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 25, 2024
36f5189
Replace manually invoking CudfHelper::load(), with re-inmplementing C…
dagardner-nv Sep 25, 2024
36f441d
remove unused import
dagardner-nv Sep 25, 2024
8922dcf
Mark --use_cpp flag as deprecated, disallow combining --use_cpp with …
dagardner-nv Sep 25, 2024
395bbf9
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Sep 25, 2024
27f0db2
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Sep 25, 2024
20b26db
IWYU fixes
dagardner-nv Sep 26, 2024
cd8a396
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Sep 26, 2024
ab7a7c4
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Sep 26, 2024
c091271
Add explicit dependency for pynvml, this was already being pulled in …
dagardner-nv Sep 26, 2024
e8e542f
Document CPU-only example
dagardner-nv Sep 26, 2024
966fb99
Document the --use_cpu_only flag.
dagardner-nv Sep 26, 2024
9d7c343
Remove out of date documentation regarting the --use_cpp and --num_th…
dagardner-nv Sep 26, 2024
a6b75d7
Remove explicit usage of CppConfig
dagardner-nv Sep 26, 2024
9fa5c3c
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 30, 2024
e1c8796
Remove use_cpp arg
dagardner-nv Sep 30, 2024
b7348b1
Default to CPP mode
dagardner-nv Sep 30, 2024
f1879de
Remove setting cppconfig in the grafana pipeline
dagardner-nv Sep 30, 2024
b19469d
Remove setting cppconfig in the viz pipelines
dagardner-nv Sep 30, 2024
38968de
Remove setting CppConfig
dagardner-nv Sep 30, 2024
20e355e
Remove uneeded pip install, use conda with the libmamba solver, remov…
dagardner-nv Sep 30, 2024
ad5f92a
Remove use_cpp
dagardner-nv Sep 30, 2024
d55996a
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Sep 30, 2024
84d6ff1
Merge branch 'david-cpu-only-mode-1846' of github.com:dagardner-nv/Mo…
dagardner-nv Sep 30, 2024
5c2542a
Merge branch 'david-cpu-only-mode-1846' of github.com:dagardner-nv/Mo…
dagardner-nv Sep 30, 2024
12c593f
Merge branch 'david-cpu-only-mode-1846-cpp-config' into david-cpu-onl…
dagardner-nv Sep 30, 2024
01fe7fd
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Sep 30, 2024
52e2ad5
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Sep 30, 2024
309da4a
Replace mamba with conda using the libmamba solver, remove --use_cpp …
dagardner-nv Sep 30, 2024
71d37e0
Cleanup help string
dagardner-nv Sep 30, 2024
0a8ad97
Document the --use_cpu_only flag, use conda rather than mamba
dagardner-nv Sep 30, 2024
c342c29
Remove --use_cpp flag
dagardner-nv Sep 30, 2024
bcf7eb8
Remove --use_cpp flag, fix documented number of threads
dagardner-nv Sep 30, 2024
67c6b2b
Remove out of date documentation about additional packages being need…
dagardner-nv Sep 30, 2024
75ae25a
Remove --use_cpp flag
dagardner-nv Sep 30, 2024
16bad6f
Remove usage --use_cpp, also remove usage of the --num_threads flag w…
dagardner-nv Sep 30, 2024
f13c545
Specify filter source in the filter stage (fixes an error)
dagardner-nv Sep 30, 2024
6240b41
Update cli flags
dagardner-nv Sep 30, 2024
f692ff6
Specify stage name
dagardner-nv Sep 30, 2024
8ab412a
Document execution modes
dagardner-nv Sep 30, 2024
d4d1895
Update to document GPU execution, use the http triton server port
dagardner-nv Sep 30, 2024
2ba0c96
wip
dagardner-nv Oct 1, 2024
a60a9b9
WIP
dagardner-nv Oct 1, 2024
2d70d3d
wip
dagardner-nv Oct 1, 2024
4fddd48
Fix spelling errors
dagardner-nv Oct 1, 2024
b05bb1d
Assume pandas in the Pythin impl
dagardner-nv Oct 1, 2024
47251fb
WIP
dagardner-nv Oct 1, 2024
13ae779
WIP
dagardner-nv Oct 1, 2024
77a87d2
Remove CppConfig
dagardner-nv Oct 1, 2024
7078dc7
Fix imports of ControlMessage and MessageMeta
dagardner-nv Oct 1, 2024
eaa5198
Remove usage of --use_cpp flag
dagardner-nv Oct 1, 2024
687827f
Remove references to using mamba, just document conda with libmamba, …
dagardner-nv Oct 1, 2024
023e365
wip
dagardner-nv Oct 1, 2024
e0512f8
Add additional troubleshooting sections covering removing in-place bu…
dagardner-nv Oct 1, 2024
1f85cb2
Refer to the troubleshooting guide
dagardner-nv Oct 1, 2024
bb6de94
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 1, 2024
1a25a8e
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 4, 2024
c13826b
Fix merge error
dagardner-nv Oct 4, 2024
fae32d2
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 4, 2024
381c569
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 4, 2024
f71e3b2
Document each of the conda environments
dagardner-nv Oct 4, 2024
fdd1159
superset not super-set
dagardner-nv Oct 4, 2024
79fbc88
Add 'superset' to our dictionary
dagardner-nv Oct 4, 2024
e6a46a6
Consolidate common code in the docker run scripts
dagardner-nv Oct 7, 2024
5d26520
Cleanup handling of DOCKER_ARGS, remove unused WORKSPACE_VOLUME env var
dagardner-nv Oct 7, 2024
78d5254
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 7, 2024
c08b7d3
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 7, 2024
b4698bd
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 7, 2024
ab49477
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 9, 2024
43c2534
Switch to using a forkserver, docs state that using fork is problemat…
dagardner-nv Oct 10, 2024
dd54ce1
Support CPU & GPU execution mode in MultiProcessingStage
dagardner-nv Oct 10, 2024
55a5b97
Test CPU and GPU execution modes
dagardner-nv Oct 10, 2024
3508628
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 10, 2024
492bd8a
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 10, 2024
71b2616
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 10, 2024
5e50dcd
IWYU fixes
dagardner-nv Oct 10, 2024
dcbbd9e
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 10, 2024
807d177
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 10, 2024
6adc180
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 10, 2024
60e6d95
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 10, 2024
dd46f71
Remove unused include
dagardner-nv Oct 10, 2024
0c690ce
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 10, 2024
e57d14e
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 10, 2024
1e0c1e5
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 10, 2024
986dbc4
Specify a cuda build of pytorch, install pytorch via conda rather tha…
dagardner-nv Oct 14, 2024
bec754a
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 14, 2024
27cfba0
Fix the config fixture to always run in gpu mode
dagardner-nv Oct 14, 2024
6540752
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 14, 2024
e79203f
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 14, 2024
0a7901a
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 14, 2024
14e6cdc
Revert "Specify a cuda build of pytorch, install pytorch via conda ra…
dagardner-nv Oct 14, 2024
dca1933
Merge branch 'branch-24.10' into david-cpu-only-mode-1846
dagardner-nv Oct 14, 2024
66d263c
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 14, 2024
829d6c2
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 14, 2024
ccd288e
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 14, 2024
24ee561
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 17, 2024
7500d37
Fix merge error
dagardner-nv Oct 17, 2024
ac2eae6
Move SupportedTypes to a class property of MonitorController
dagardner-nv Oct 17, 2024
d243108
Rename DataFrameTypeStr to DataFrameModule
dagardner-nv Oct 17, 2024
f7d4bf3
Fix overloads for get_json_reader
dagardner-nv Oct 17, 2024
1b89232
Add property methods to the mixin to wrap common type_utils uses
dagardner-nv Oct 17, 2024
9362562
Formatting fixes
dagardner-nv Oct 17, 2024
fb90067
make the get_df_pkg and get_df_class wrappers methods not properties …
dagardner-nv Oct 17, 2024
075b0fa
Update stages to use GpuAndCpuMixin helpers
dagardner-nv Oct 17, 2024
319595e
Add helper methods for getting a read_csv and read_parquet method
dagardner-nv Oct 17, 2024
ce8ea07
Use get_csv_reader
dagardner-nv Oct 17, 2024
7be0402
Fix imports
dagardner-nv Oct 17, 2024
fa67db6
Rase a ValueError instead of a KeyError to match behavior of the C++ …
dagardner-nv Oct 17, 2024
485764c
Remove inconsistent tensor reshaping issue #1955
dagardner-nv Oct 17, 2024
d903feb
Update ControlMemory tests to test the Python and C++ impls
dagardner-nv Oct 17, 2024
ef466ae
Test should be run in both cpu and gpu modes
dagardner-nv Oct 17, 2024
357a6e2
Remove unused config_only_cpp and config_no_cpp fixtures
dagardner-nv Oct 17, 2024
1998922
lint fixes
dagardner-nv Oct 17, 2024
a0f5e5b
Fix cpu-mode json tests
dagardner-nv Oct 17, 2024
80e817a
Fix misleading runtime erro messafe, remove unused inferring gpu mode…
dagardner-nv Oct 17, 2024
32fb3b8
Ignore code.visualstudio.com, these urls are being forbidden when run…
dagardner-nv Oct 17, 2024
13a0eb6
Merge branch 'david-cpu-only-mode-1846' into david-cpu-only-llm
dagardner-nv Oct 18, 2024
acff1f0
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 18, 2024
341ffe0
Improved doc strings
dagardner-nv Oct 18, 2024
fe58767
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 18, 2024
cabfc51
Merge branch 'david-cpu-only-llm' into david-cpu-only-docs
dagardner-nv Oct 18, 2024
368ea5d
Misc docstring improvements
dagardner-nv Oct 18, 2024
77c5afc
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 18, 2024
b9d5e07
Merge branch 'david-cpu-only-docs' into david-contrib-conda-yaml-1660
dagardner-nv Oct 19, 2024
63b9fcf
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 19, 2024
e907c67
Update docs/source/developer_guide/contributing.md
dagardner-nv Oct 21, 2024
fdc56a2
Merge branch 'branch-24.10' of github.com:nv-morpheus/Morpheus into d…
dagardner-nv Oct 21, 2024
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Expand instruction for running rapids-dependency-file-generator
dagardner-nv Oct 21, 2024
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Merge branch 'david-contrib-conda-yaml-1660' of github.com:dagardner-…
dagardner-nv Oct 21, 2024
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1 change: 1 addition & 0 deletions ci/vale/styles/config/vocabularies/morpheus/accept.txt
Original file line number Diff line number Diff line change
Expand Up @@ -71,6 +71,7 @@ pytest
[Ss]ubcard(s?)
[Ss]ubgraph(s?)
[Ss]ubword(s?)
[Ss]uperset(s?)
[Tt]imestamp(s?)
[Tt]okenization
[Tt]okenizer(s?)
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42 changes: 36 additions & 6 deletions docs/source/developer_guide/contributing.md
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Expand Up @@ -151,7 +151,35 @@ This workflow utilizes a Docker container to set up most dependencies ensuring a

### Build in a Conda Environment

If a Conda environment on the host machine is preferred over Docker, it is relatively easy to install the necessary dependencies (In reality, the Docker workflow creates a Conda environment inside the container).
If a [Conda](https://docs.conda.io/projects/conda/en/latest/) environment on the host machine is preferred over Docker, it is relatively easy to install the necessary dependencies (In reality, the Docker workflow creates a Conda environment inside the container).

#### Conda Environment YAML Files
Morpheus provides multiple Conda environment files to support different workflows. Morpheus utilizes [rapids-dependency-file-generator](https://pypi.org/project/rapids-dependency-file-generator/) to manage these multiple environment files. All of Morpheus' Conda and [pip](https://pip.pypa.io/en/stable/) dependencies along with the different environments are defined in the `dependencies.yaml` file.

The following are the available Conda environment files, all are located in the `conda/environments` directory, with the following naming convention: `<environment>_<cuda_version>_arch-<architecture>.yaml`.
| Environment | File | Description |
| --- | --- | --- |
| `all` | `all_cuda-125_arch-x86_64.yaml` | All dependencies required to build, run and test Morpheus, along with all of the examples. This is a superset of the `dev`, `runtime` and `examples` environments. |
| `dev` | `dev_cuda-125_arch-x86_64.yaml` | Dependencies required to build, run and test Morpheus. This is a superset of the `runtime` environment. |
| `examples` | `examples_cuda-125_arch-x86_64.yaml` | Dependencies required to run all examples. This is a superset of the `runtime` environment. |
| `model-utils` | `model-utils_cuda-125_arch-x86_64.yaml` | Dependencies required to train models independent of Morpheus. |
| `runtime` | `runtime_cuda-125_arch-x86_64.yaml` | Minimal set of dependencies strictly required to run Morpheus. |


##### Updating Morpheus Dependencies
Changes to Morpheus dependencies can be made in the `dependencies.yaml` file, then run `rapids-dependency-file-generator` to update the individual environment files in the `conda/environments` directory .

Install `rapids-dependency-file-generator` into the base Conda environment:
```bash
conda run -n base --live-stream pip install rapids-dependency-file-generator
```

Then to generate update the individual environment files run:
```bash
conda run -n base --live-stream rapids-dependency-file-generator
```

When ready, commit both the changes to the `dependencies.yaml` file and the updated environment files into the repo.

#### Prerequisites

Expand All @@ -170,19 +198,21 @@ If a Conda environment on the host machine is preferred over Docker, it is relat
```bash
git submodule update --init --recursive
```
1. Create the Morpheus Conda environment
1. Create the Morpheus Conda environment using either the `dev` or `all` environment file. Refer to the [Conda Environment YAML Files](#conda-environment-yaml-files) section for more information.
```bash
conda env create --solver=libmamba -n morpheus --file conda/environments/dev_cuda-125_arch-x86_64.yaml
conda activate morpheus
```
or
```bash
conda env create --solver=libmamba -n morpheus --file conda/environments/all_cuda-125_arch-x86_64.yaml

This creates a new environment named `morpheus`, and activates that environment.
```

> **Note**: The `dev_cuda-121_arch-x86_64.yaml` Conda environment file specifies all of the dependencies required to build Morpheus and run Morpheus. However many of the examples, and optional packages such as `morpheus_llm` require additional dependencies. Alternately the following command can be used to create the Conda environment:
This creates a new environment named `morpheus`. Activate the environment with:
```bash
conda env create --solver=libmamba -n morpheus --file conda/environments/all_cuda-121_arch-x86_64.yaml
conda activate morpheus
```

1. Build Morpheus
```bash
./scripts/compile.sh
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