Pydra

pre-commit updates and code fixes #1109

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Run time

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Job	Run time
build	1m 3s
test (macos-latest, 3.8, wheel)	8m 29s
test (macos-latest, 3.9, wheel)	8m 5s
test (macos-latest, 3.10, wheel)	6m 46s
test (macos-latest, 3.11, wheel)	6m 15s
test (ubuntu-latest, 3.8, wheel)	4m 22s
test (ubuntu-latest, 3.9, wheel)	3m 36s
test (ubuntu-latest, 3.10, wheel)	4m 5s
test (ubuntu-latest, 3.11, wheel)	3m 49s
test (windows-latest, 3.8, wheel)	7m 12s
test (windows-latest, 3.9, wheel)	6m 56s
test (windows-latest, 3.10, wheel)	7m 8s
test (windows-latest, 3.11, wheel)	8m 48s
test (ubuntu-latest, 3.11, sdist)	3m 47s
test (ubuntu-latest, 3.11, repo)	4m 13s
test (ubuntu-latest, 3.11, archive)	4m 3s
	1h 28m 37s