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Task Generation#2

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chasejohnson3 wants to merge 14 commits intonipype:masternipype/pydra-sem:masterfrom chasejohnson3:masterchasejohnson3/pydra-sem:masterCopy head branch name to clipboard

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Commits on Nov 20, 2020

• Changed the generate_tasks.py script to be compatible with Python3.7+, the current pydra version, and be useable by BRAINSTools (in particular, BRAINSConstellationDetector)

  Show description for 46ce476
  

  Chase Johnson

  committed
  46ce476

Commits on Nov 24, 2020

• Added the xmls for BRAINSTools.

  

  Chase Johnson

  committed
  6573d8a

Commits on Nov 30, 2020

• Made the output_spec generated by generate_tasks.py compatible with BRAINSToolsResample.

  

  Charles E Johnson III

  committed
  b3179a0

Commits on Dec 1, 2020

• Changed the output File type to pydra.specs.File. This allows an output file name to be specified, but the filename does not already have to exist.

  

  Charles E Johnson III

  committed
  e68e315

• Changed the output_fields ouput_file_templates to be based on the input_field outputVolume rather than inputVolume.

  

  Charles E Johnson III

  committed
  943345d

Commits on Dec 2, 2020

• type in output specs use pydra.specs.<type> instead of just <type>

  

  Charles E Johnson III

  committed
  b6fa791

Commits on Dec 28, 2020

• Updated the README to explain how to generate pydra tasks with this repo.

  chasejohnson3

  committed
  935876e

Commits on Dec 30, 2020

• Implemented specifying task name for a generated pydra task.

  chasejohnson3

  committed
  91b4f76

Commits on Jan 21, 2021

• Added functionality to specify the executable for a pydra task.

  chasejohnson3

  committed
  2820bb3

Commits on Jan 22, 2021

• Added empty string as help_str for SEM entries without description.

  chasejohnson3

  committed
  42bc95d

• Fixed bug to set multiple output files to type MultipleOutputFile instead of MultipleInputFile.

  chasejohnson3

  committed
  558f11d

Commits on Feb 25, 2021

• The multiple flag no longer creates a MultiInputObj, as it was causing issues with pydra ShellCommandTasks.

  chasejohnson3

  committed
  44f1e7a

Commits on Mar 2, 2021

• Only allowing parameters with input or output in the name to be of type File, not MultiInputFile/MultiOutputFile.

  chasejohnson3

  committed
  ce0a562

Commits on Mar 28, 2021

• Allowing the cache dir to be set in creating a pydra task.

  

  Chase Johnson

  committed
  d464682