Convert Notebooks #58
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| # Execute notebooks and convert them to Markdown and HTML | |
| name: Convert Notebooks | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - 'main' | |
| paths: | |
| - 'notebooks/**.ipynb' | |
| - 'notebooks/**.py' | |
| - 'requirements.txt' | |
| - 'README.md' | |
| - '.ci/*' | |
| - '.github/workflows/convert_notebooks.yml' | |
| pull_request: | |
| paths: | |
| - '.github/workflows/convert_notebooks.yml' | |
| schedule: | |
| - cron: "0 0 * * *" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| # Matrix is unnecessary here, but this allows easy copying of steps from treon.yml | |
| matrix: | |
| os: [ubuntu-22.04] | |
| python: [3.8] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Maximize build space | |
| run: | | |
| sudo rm -rf /usr/local/lib/android # will release about 10 GB if you don't need Android | |
| sudo rm -rf /usr/share/dotnet # will release about 20GB if you don't need .NET | |
| sudo rm -rf /opt/ghc | |
| echo "Available storage:" | |
| df -h | |
| - name: Set Swap Space | |
| uses: pierotofy/set-swap-space@master | |
| with: | |
| swap-size-gb: 10 | |
| - name: Install required packages for rst converstion | |
| run: | | |
| sudo apt-get update && sudo apt-get install texlive texlive-latex-extra pandoc -y | |
| shell: bash | |
| #### Installation/preparation #### | |
| # | |
| # These steps are copied from convert_notebooks.yml | |
| # This should ideally be a reusable workflow | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Dotenv Action | |
| id: dotenv | |
| uses: xom9ikk/[email protected] | |
| with: | |
| path: ./.github/workflows | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install required packages | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt-get install libsndfile1 -y | |
| fi | |
| shell: bash | |
| - name: Cache OpenVINO Pip Packages | |
| id: cachepip | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| pipcache | |
| key: ${{ env.PIP_CACHE_KEY }}-${{ matrix.os }}-${{ matrix.python }} | |
| # Cache specific files to reduce downloads or prevent network issues | |
| - name: Cache Files | |
| id: cachefiles | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| # NOTE: when modifying cache paths, update FILES_CACHE_KEY in .env | |
| # and change cache paths in both treon.yml and convert_notebooks.yml | |
| case_00030.zip | |
| notebooks/110-ct-segmentation-quantize/kits19_frames_1 | |
| notebooks/112-pytorch-post-training-quantization-nncf/output/tiny-imagenet-200.zip | |
| # 208 omz cache location is set to this with test_replace | |
| notebooks/208-optical-character-recognition/open_model_zoo_cache | |
| notebooks/110-ct-scan-live-inference/kits19_frames_1 | |
| notebooks/212-onnx-style-transfer/model | |
| notebooks/302-pytorch-quantization-aware-training/data/tiny-imagenet-200.zip | |
| key: ${{ env.FILES_CACHE_KEY }} | |
| # PaddleGAN stores cache in ppgan directory in CACHE_DIR | |
| - name: Set CACHE_DIR | |
| shell: bash | |
| run: | | |
| python -c 'import os;print("CACHE_DIR={0}".format(os.path.expanduser(os.path.join("~", ".cache"))))' | |
| # replace backslashes with forward slashes for Windows paths | |
| python -c 'import os;print("CACHE_DIR={0}".format(os.path.expanduser(os.path.join("~", ".cache"))))' | sed -e 's/\\/\//g' >> $GITHUB_ENV | |
| # PaddleHub stores cache in directory pointed to by HUB_HOME environment variable | |
| - name: Set HUB_HOME | |
| shell: bash | |
| run: | | |
| echo HUB_HOME=${{ env.CACHE_DIR }}/.paddlehub >> $GITHUB_ENV | |
| # Cache PaddlePaddle cache directories to prevent CI failing due to network/download issues | |
| - name: Cache PaddlePaddle cache directories (per OS) | |
| id: cacheusercache | |
| uses: actions/cache@v2 | |
| with: | |
| path: | | |
| ${{ env.HUB_HOME }} | |
| ${{ env.CACHE_DIR }}/paddle | |
| ${{ env.CACHE_DIR }}/ppgan | |
| key: ${{ env.USER_CACHE_KEY }}-${{ runner.os }} | |
| - name: Cache openvino packages | |
| if: steps.cachepip.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip==21.3.* | |
| mkdir pipcache | |
| python -m pip install --cache-dir pipcache --no-deps openvino openvino-dev nncf | |
| cp -r pipcache pipcache_openvino | |
| python -m pip uninstall -y openvino openvino-dev nncf | |
| # Download a small dataset to use for testing purposes in monai-kidney training notebook | |
| - name: Download CT files | |
| if: steps.cachefiles.outputs.cache-hit != 'true' | |
| run: | | |
| curl -O https://storage.openvinotoolkit.org/data/test_data/openvino_notebooks/kits19/case_00030.zip | |
| - name: Copy CT files | |
| run: | | |
| mkdir notebooks/110-ct-segmentation-quantize/kits19 | |
| mkdir notebooks/110-ct-segmentation-quantize/kits19/kits19_frames | |
| unzip case_00030.zip | |
| cp -r case_00030 case_00001 | |
| mv case_00030 notebooks/110-ct-segmentation-quantize/kits19/kits19_frames | |
| mv case_00001 notebooks/110-ct-segmentation-quantize/kits19/kits19_frames | |
| - name: Download shared datasets | |
| run: | | |
| mkdir notebooks/data/librispeech | |
| wget -O notebooks/data/librispeech/test-clean.tar.gz http://openslr.elda.org/resources/12/test-clean.tar.gz | |
| tar -xvf notebooks/data/librispeech/test-clean.tar.gz | |
| mkdir notebooks/data/cifar10 | |
| wget -O notebooks/data/cifar10/cifar-10-python.tar.gz https://www.cs.toronto.edu/~kriz/cifar-10-python.tar.gz | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip==21.3.* | |
| python -m pip install -r .ci/dev-requirements.txt --cache-dir pipcache | |
| python -m ipykernel install --user --name openvino_env | |
| # Cache OpenVINO packages. mv works cross-platform | |
| - name: Make pipcache directory with OpenVINO packages | |
| if: steps.cachepip.outputs.cache-hit != 'true' | |
| run: | | |
| mv pipcache pipcache_full | |
| mv pipcache_openvino pipcache | |
| # Create list of installed pip packages that can be downloaded as artifacts | |
| # to verify the exact environment of a specific test run | |
| - name: Pip freeze | |
| run: | | |
| python -m pip freeze | |
| python -m pip freeze > pip-freeze-${{ github.sha }}-${{matrix.os}}-${{ matrix.python }}.txt | |
| - name: Archive pip freeze | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: pip-freeze | |
| path: pip-freeze-${{ github.sha }}-${{matrix.os}}-${{ matrix.python }}.txt | |
| #### End installation/preparation | |
| - name: convert_notebooks | |
| shell: bash | |
| run: .ci/convert_notebooks.sh | |
| - name: Save HTML files | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: html_files | |
| path: html_files | |
| - name: Save Markdown files | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: markdown_files | |
| path: markdown_files | |
| - name: Save reStructuredText files | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: rst_files | |
| path: rst_files | |